PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 28648.9 Da PI: 4.4026 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52 | 2.4e-16 | 12 | 146 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka....eekewyfFskrdkkyatgkrknr..atksgyWkatgkdke 91 ++rF Ptd e+++++L ++ ++ + + i+ ++ +++ P++L+ +++++ ++ +y+F ++ ++ +r + + g Wk +gk ++ XP_013599436.1 12 CLRFVPTDVEVIDQFLVPRHQHLLNLNRSLIRPFNFFRTAPQQLNlEATYGseyyPRRGLYWFLVERPASVIAVTGSRtlINRMGSWKRSGKPEN 106 68*****************99988666578**************9432222222234477999888887774444444224679*********** PP NAM 92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128 ++s +g g+k+ + f + ++p kt W + ey++ XP_013599436.1 107 IVS-GGIMLGTKQLFKFLytdpTTSKPANLKTGWSLYEYAI 146 ***.9***********98777767899999*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.398 | 9 | 173 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.18E-18 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-8 | 13 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNLNPNPQGL YCLRFVPTDV EVIDQFLVPR HQHLLNLNRS LIRPFNFFRT APQQLNLEAT 60 YGSEYYPRRG LYWFLVERPA SVIAVTGSRT LINRMGSWKR SGKPENIVSG GIMLGTKQLF 120 KFLYTDPTTS KPANLKTGWS LYEYAIPDPP LPQTPTDDIL PVEPTVVVNV FYNVSDDEYR 180 RSGHAVPQEP VQVVEAEDNG EAAQGQEGHV EEDNGGAAQG QEGHVEEDND NNNNVVNDDE 240 DVFANLAPIA NIPNNI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599436.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599436.1 | 0.0 | PREDICTED: uncharacterized protein LOC106307109 | ||||
TrEMBL | A0A0D3A5X2 | 0.0 | A0A0D3A5X2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g037810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17442 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 9e-07 | NAC domain containing protein 28 |