PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599360.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 405aa MW: 45418.3 Da PI: 6.0194

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	438.1	6.4e-134	45	405	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +L++cA+a+s+++l laq+++ +l+ ++s +g+p+qRl ay++e+L rla ++s++yk+l+++e + s + l+++ l++ev+P++kf+++ a XP_013599360.1 45 VLVACAKAISENNLLLAQWCIGELRGMVSISGEPIQRLGAYMLEGLVVRLAATGSSIYKSLQSREPE---SYDFLSYVYLLHEVCPYFKFGYMSA 136 79*************************************************************99...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N aI ea++ eer+HiiDf+i++G QW+aL+qa+a+Rp+g+p++RiTg+g+ +l ++++rL+k+A++++vpf+f++ v+ + ++e+e+ XP_013599360.1 137 NGAIAEAMKDEERIHIIDFQIGEGSQWVALIQAFAARPGGAPNIRITGIGD-----GSKLVAVRRRLEKLAKKFDVPFKFHA-VSASSYKVEVEN 225 ***********************************************.....889*******************.7999999* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 L+v+ gEal Vn++++lh+l+desvs+e++rd+vL++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri+vE++ XP_013599360.1 226 LDVRIGEALGVNFAYMLHHLPDESVSTENHRDRVLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVILPRNHKERINVEQH 320 ******************************************************************************************* PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l+ ++vn++acegaer+ rhe l+kW++r+++aGF p+pls+ + +++++ll+ ++ +gy +ee++g+l+lgW+dr Lvs +aW+ XP_013599360.1 321 CLASDVVNIIACEGAERIVRHELLGKWKSRFSMAGFVPYPLSSVVSATIRSLLKDYN-NGYGIEERDGALCLGWMDRILVSSCAWK 405 *****************************************************.9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.266	16	386	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-131	45	405	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MLQPLPEIAE SINDSVYYEH SIWPGDTDDL MLIVDAISRG DLKWVLVACA KAISENNLLL 60 AQWCIGELRG MVSISGEPIQ RLGAYMLEGL VVRLAATGSS IYKSLQSREP ESYDFLSYVY 120 LLHEVCPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGEG SQWVALIQAF AARPGGAPNI 180 RITGIGDGSK LVAVRRRLEK LAKKFDVPFK FHAVSASSYK VEVENLDVRI GEALGVNFAY 240 MLHHLPDESV STENHRDRVL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF 300 ESIDVILPRN HKERINVEQH CLASDVVNII ACEGAERIVR HELLGKWKSR FSMAGFVPYP 360 LSSVVSATIR SLLKDYNNGY GIEERDGALC LGWMDRILVS SCAWK

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MLQPLPEIAE SINDSVYYEH SIWPGDTDDL MLIVDAISRG DLKWVLVACA KAISENNLLL  60
AQWCIGELRG MVSISGEPIQ RLGAYMLEGL VVRLAATGSS IYKSLQSREP ESYDFLSYVY  120
LLHEVCPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGEG SQWVALIQAF AARPGGAPNI  180
RITGIGDGSK LVAVRRRLEK LAKKFDVPFK FHAVSASSYK VEVENLDVRI GEALGVNFAY  240
MLHHLPDESV STENHRDRVL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF  300
ESIDVILPRN HKERINVEQH CLASDVVNII ACEGAERIVR HELLGKWKSR FSMAGFVPYP  360
LSSVVSATIR SLLKDYNNGY GIEERDGALC LGWMDRILVS SCAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-59	46	405	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599360.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q9S7H5	0.0	SCL21_ARATH; Scarecrow-like protein 21
TrEMBL	A0A0D3D4J3	0.0	A0A0D3D4J3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EUR6	0.0	A0A3P6EUR6_BRAOL; Uncharacterized protein
STRING	Bo7g030310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM621	28	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	0.0	SCARECROW-like 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]