PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 765aa MW: 84553.6 Da PI: 7.4781 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 2e-18 | 278 | 377 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_013599015.1 278 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 370 99**************************555566778***************9989999999***9.********************654.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_013599015.1 371 LVMGYRK 377 7777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-30 | 271 | 381 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-20 | 275 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-22 | 276 | 377 | No hit | No description |
Pfam | PF02362 | 1.3E-15 | 278 | 377 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-20 | 278 | 378 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.053 | 278 | 379 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.874 | 507 | 557 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.5E-12 | 512 | 554 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MESTKVCMNA QCGSTSTSGE WKRGWSMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR 60 ECNSCDKRLH CGCIASRFMM ELVDNGGVTC ITCAKKSGLF SMNVESNGRE FPTFASAEHV 120 SSVLERTNLN HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG 180 PTLMTSQFHD VDDRSKTTPI FQLASRSRQL LPKPANSAPT TAPPMEPNGS LVSQIHVARP 240 PPEGRGKTQL LPRYWPRITD QELQQLSGHS NSKIIPLFEK VLSASDAGRI GRLVLPKACA 300 EAYFPPISQP EGLPLKIQDI KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV 360 TFSRTEPEGK LVMGYRKATN STAAQMFKGS SEPNLNMFSN NLSSGCGDIN WSKLDKSDDM 420 SKDGLMLQPS LISARKRVRN IGTKSKRLLI DSVDVLELRL TWEEAQELLR PPQSAKPSIC 480 TVEDHDFEEY DEPPVFGKRT VFVSRQTGEQ EQWVQCDACA KWRRLPVDTL LPPKWLCSDN 540 VLDPSRSSCS APDELTPREQ DTLLRLSKEF KRRRLASSNQ EAASALDTLA NAAITTTGEQ 600 GETEVAATTK HPRHRAGCSC IVCSQPPSGK GKHKPSCTCT VCEAVKRRFK TLMMRKRNRG 660 ETGQASQQAQ SDQCREETEA ESIPAVELPA AGGNIDLNSD PASRVSMMSL LQAATFPLEV 720 YLKQKGVPNT AGEQQSSDIV STENGSSSAA QEHDRDTSGA PEALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-69 | 256 | 385 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 570 | 574 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599015.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599015.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A0D3DHA9 | 0.0 | A0A0D3DHA9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F8U4 | 0.0 | A0A3P6F8U4_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g115570.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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