 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013598468.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
GRAS |
| Protein Properties |
Length: 579aa MW: 63150.5 Da PI: 5.6706 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013598468.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 443.4 | 1.6e-135 | 214 | 574 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset.seknsseelaalklfsevsPilkfs 94
lv++L++cAeav+s++l+la+al++++ la +++ +m+++a+yf+eALa+r++r l+p +t +++ s++l++ f+e++P+lkf+
XP_013598468.1 214 LVHALMACAEAVQSSNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LSPPQTqIDHSLSDTLQM--HFYETCPYLKFA 298
689****************************************************........444444043445555444..5*********** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
h+taNqaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpps+R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+dl
XP_013598468.1 299 HFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADL 393
*********************************************************************************************** PP
GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
+ ++L+++p Ea+aVn+v++lh+ll +++ +e+ v +v +++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle s+++
XP_013598468.1 394 DASMLELRPseTEAVAVNSVFELHKLLGRPGGIEK----VFGVVTQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGA---PSSQD 481
********9999*******************9999....*********************************************999...79999 PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+++++++lg++i+n+vaceg +r+erhetl++W++r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+l W++rpL+++SaW+
XP_013598468.1 482 KVMSEVYLGKQICNLVACEGPDRVERHETLSQWSNRFGSSGFVPAHLGSNAFKQASTLLALFNrGEGYRVEENNGCLMLSWHTRPLITTSAWK 574
********************************************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0010218 | Biological Process | response to far red light |
| GO:0042176 | Biological Process | regulation of protein catabolic process |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:2000033 | Biological Process | regulation of seed dormancy process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 579 aa
Download sequence Send
to blast |
MKRDLHQFQG PNHGTSIAGS STSSPAVFGK DKMMMVKEEE DDELLGVVGY KVRSSEMAEV 60
ALKLEQLETM MGNVQEDGLA HLATDTVHYN PAELYSWLDN MLTELNPPAA SGSSGLNQIL 120
PSPEVNNSFF TGGGEYDLKA IPGSAICRRS NQFPVDSSNN KRLKPCSSPD SMVTSPSPAV 180
QIGGVVGTTV TTTTASESTR PLILVDSQDN GVRLVHALMA CAEAVQSSNL TLAEALVKQI 240
GFLAVSQAGA MRKVATYFAE ALARRIYRLS PPQTQIDHSL SDTLQMHFYE TCPYLKFAHF 300
TANQAILEAF EGKKRVHVID FSMNQGLQWP ALMQALALRE GGPPSFRLTG IGPPAADNSD 360
HLHEVGCKLA QLAEAIHVEF EYRGFVANSL ADLDASMLEL RPSETEAVAV NSVFELHKLL 420
GRPGGIEKVF GVVTQIKPVI FTVVEQESNH NGPVFLDRFT ESLHYYSTLF DSLEGAPSSQ 480
DKVMSEVYLG KQICNLVACE GPDRVERHET LSQWSNRFGS SGFVPAHLGS NAFKQASTLL 540
ALFNRGEGYR VEENNGCLML SWHTRPLITT SAWKLSAVH
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. {ECO:0000269|PubMed:15734906}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY928549 | 0.0 | AY928549.1 Brassica rapa DELLA protein (RGA1) gene, complete cds. |
