PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 384aa MW: 43190.9 Da PI: 8.2593

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013598135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.9	3.8e-40	166	242	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak+yhr+h+vCe hsk+p+v vsg+e+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q XP_013598135.1 166 RCQIDGCELDLSSAKDYHRKHRVCENHSKCPKVSVSGIERRFCQQCSRFHAVSEFDETKRSCRKRLSHHNARRRKPQ 242 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.4E-33	159	228	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.188	164	241	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.45E-37	165	242	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-30	167	240	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETD KGEGIESMFP CFNGVDRVSN 60 CSTTSLWDTP VSKSSQSTST NSSSPGVKQR MLASESSRGD SCCNIDLVQV KASVASAESD 120 LSLKLGKRTY SEEFWGRNNN NDISLTPPVV TRKKSKTCGQ SMQVPRCQID GCELDLSSAK 180 DYHRKHRVCE NHSKCPKVSV SGIERRFCQQ CSRFHAVSEF DETKRSCRKR LSHHNARRRK 240 PQGVFPFNPD RVYDRRQHTN MLWNGLSLDT RSEEKFAWET TNDIKPTQTE SSFTLSFQRG 300 NGSEQQLFAS SNHSYSAYQT SGGFSAGKPK FQLHGQGVGE YSGVLHESRE FHRALSLLST 360 SSDHLVQPHA QPLSLLFSYD GVPK

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETD KGEGIESMFP CFNGVDRVSN  60
CSTTSLWDTP VSKSSQSTST NSSSPGVKQR MLASESSRGD SCCNIDLVQV KASVASAESD  120
LSLKLGKRTY SEEFWGRNNN NDISLTPPVV TRKKSKTCGQ SMQVPRCQID GCELDLSSAK  180
DYHRKHRVCE NHSKCPKVSV SGIERRFCQQ CSRFHAVSEF DETKRSCRKR LSHHNARRRK  240
PQGVFPFNPD RVYDRRQHTN MLWNGLSLDT RSEEKFAWET TNDIKPTQTE SSFTLSFQRG  300
NGSEQQLFAS SNHSYSAYQT SGGFSAGKPK FQLHGQGVGE YSGVLHESRE FHRALSLLST  360
SSDHLVQPHA QPLSLLFSYD GVPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-26	167	240	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:14573523}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00161	DAP	Transfer from AT1G27360	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013598135.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598135.1	0.0	PREDICTED: squamosa promoter-binding-like protein 11
Refseq	XP_013598136.1	0.0	PREDICTED: squamosa promoter-binding-like protein 11
Refseq	XP_013598137.1	0.0	PREDICTED: squamosa promoter-binding-like protein 11
Refseq	XP_013598138.1	0.0	PREDICTED: squamosa promoter-binding-like protein 11
Swissprot	Q9FZK0	0.0	SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBL	A0A0D3D6H0	0.0	A0A0D3D6H0_BRAOL; Uncharacterized protein
STRING	Bo7g049950.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5004	16	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	0.0	squamosa promoter-like 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Stief A, et al. Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. Plant Cell, 2014. 26(4): p. 1792-1807 [PMID:24769482] Liu J, et al. The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice. PLoS Pathog., 2015. 11(2): p. e1004629 [PMID:25658451] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]