PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597929.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 272aa    MW: 30736.9 Da    PI: 6.2487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-10301041188
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +++++ ++p +f+++       +  +++  ++g+sW++ l  ++ +++ ++ ++ W eFv++n L  +D+++F +++++
  XP_013597929.1  30 SSKSMRIIPEEFVRSAPVA--FEHRVVFSVRWGNSWQLWL--QRDKNGlFMEEEDWDEFVSDNFLGPNDVLLFIHVDTM 104
                     34466799*****998433..4457***************..88887879999********************987643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-1513113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-1415114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-1217112No hitNo description
SMARTSM010194.1E-1519114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.03920114IPR003340B3 DNA binding domain
PfamPF023626.9E-930103IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-6172259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-4173259IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.014179271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSGKSVYNLL QDNVSKPRFC KSLSTGETWS SKSMRIIPEE FVRSAPVAFE HRVVFSVRWG  60
NSWQLWLQRD KNGLFMEEED WDEFVSDNFL GPNDVLLFIH VDTMFIEVQI YKQDSYHLKE  120
ITSAPLQTDP QAEVVTPLPQ TSPPETPAPA PASTSGARQA DALVNNPEQY LSNPSNPFFV  180
KKLGKKIDVL YVSHLVTERY GLQFGPHNSP MFYILPNEKI EANTKIYGGC ACFNGWAAIC  240
RKYKLKQGDA VVCELERSGG VVTAVRLHFP NE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597929.10.0PREDICTED: B3 domain-containing protein At5g25470-like
RefseqXP_013597930.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D95e-99Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A3N6RVG80.0A0A3N6RVG8_BRACR; Uncharacterized protein
STRINGBra009842.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.27e-99B3 family protein