PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 899aa MW: 99710.7 Da PI: 4.7631

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.9e-28	613	663	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_013597837.1 613 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 663 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	602	683	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-24	616	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-24	791	886	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-23	799	882	No hit	No description
SMART	SM00666	1.8E-26	801	884	IPR000270	PB1 domain
PROSITE profile	PS51745	26.329	801	884	IPR000270	PB1 domain
Pfam	PF00564	5.8E-16	802	883	IPR000270	PB1 domain
CDD	cd06407	1.35E-43	802	883	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET 60 EEGASDSTAM NANSPFLCFG ENPSQDNFSN EETERMNQEG LDQAEKFLLD EAEVGRSWWI 120 APRTREDPSS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YTSLAKYRHV SENYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC 240 DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPSN 300 ESLQVYNDFY YAALPEISDF LASVCRRYVL PLALSWAPCA QQGKGGSRHS DKNFSQCVST 360 IDSACFVLDE ESKYFLEACS EHHLLQGEGI VGKAFKATKL CFVPEVITFS KTNYPLAHHA 420 KISGLHAALA VPLKSKSNGL VDFVLEFFFP KGCLDTEAKQ EMLKSLSVTL QQDFRSSNLV 480 IDKDLELEVV LPVREDMVLL ENPLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL 540 SWEYQNEDPK DEFKLSPGWN NSQLDPAPNN IPSEAEQFQQ GSTSGLRVDA GPSTESASTG 600 GRRPGEKRRT KTEKTIGLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI 660 KKVGHSLKKL QLVMDSVQGA QGSIPLDSFY TSFPELSSPN ISSNESSLKN NEQLHHLSVP 720 IENGGVAEDK PAQMSPSSSG SGSNTNTPNA NGVLKEAQNE VELQNGNQEE TKCLARTQSH 780 NIFKEPPLPG SSKMSLRDGG GIKVKATFGE AIIRFTLLPS WGYRELQQEI ARRFNIVDVS 840 WFDLKYLDDD EEWVLLTCEA DLEECIDIYR SSQSQTIKIS LHDPFQVKLG GSFGSSGPS

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET  60
EEGASDSTAM NANSPFLCFG ENPSQDNFSN EETERMNQEG LDQAEKFLLD EAEVGRSWWI  120
APRTREDPSS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YTSLAKYRHV SENYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC  240
DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPSN  300
ESLQVYNDFY YAALPEISDF LASVCRRYVL PLALSWAPCA QQGKGGSRHS DKNFSQCVST  360
IDSACFVLDE ESKYFLEACS EHHLLQGEGI VGKAFKATKL CFVPEVITFS KTNYPLAHHA  420
KISGLHAALA VPLKSKSNGL VDFVLEFFFP KGCLDTEAKQ EMLKSLSVTL QQDFRSSNLV  480
IDKDLELEVV LPVREDMVLL ENPLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL  540
SWEYQNEDPK DEFKLSPGWN NSQLDPAPNN IPSEAEQFQQ GSTSGLRVDA GPSTESASTG  600
GRRPGEKRRT KTEKTIGLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI  660
KKVGHSLKKL QLVMDSVQGA QGSIPLDSFY TSFPELSSPN ISSNESSLKN NEQLHHLSVP  720
IENGGVAEDK PAQMSPSSSG SGSNTNTPNA NGVLKEAQNE VELQNGNQEE TKCLARTQSH  780
NIFKEPPLPG SSKMSLRDGG GIKVKATFGE AIIRFTLLPS WGYRELQQEI ARRFNIVDVS  840
WFDLKYLDDD EEWVLLTCEA DLEECIDIYR SSQSQTIKIS LHDPFQVKLG GSFGSSGPS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597837.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597834.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_013597835.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_013597836.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_013597837.1	0.0	PREDICTED: protein NLP1 isoform X1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A0D3D3J2	0.0	A0A0D3D3J2_BRAOL; Uncharacterized protein
STRING	Bo7g014920.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]