PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597789.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 722aa MW: 83474.9 Da PI: 5.772 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.3 | 9.6e-27 | 32 | 131 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+eYAk++GF++ +++s++s+++g++++++fvC+++g++++++++ ++ +r ++++++t+Cka+l+vkk++dg+w++ l++eH XP_013597789.1 32 EFYKEYAKSIGFNTIIKASRRSRMSGKFIDAKFVCTRYGTKKTDEEEeedinipqarKRGRRINHSSSKTDCKACLHVKKRQDGRWVIRALVKEH 126 6****************************************99999999****9986666667999***************************** PP FAR1 86 nHela 90 nHe + XP_013597789.1 127 NHETF 131 **976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-24 | 32 | 131 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.4E-21 | 208 | 300 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.014 | 480 | 516 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.9E-6 | 491 | 518 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 9.6E-6 | 493 | 514 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MEIDLEMSSE ECDDDQRINK GLEFESKEEA FEFYKEYAKS IGFNTIIKAS RRSRMSGKFI 60 DAKFVCTRYG TKKTDEEEEE DINIPQARKR GRRINHSSSK TDCKACLHVK KRQDGRWVIR 120 ALVKEHNHET FPPGQVSSIR DSYGREREMK KSRKFQALEG GDVERLLSFF TDMQAENPFF 180 FYSVDQCLRS VFWVDAKGRL DYACFSDVVS VDTTFVKNEY KLPLVAFIGV NHHGQFLLLG 240 CGLLLDDEST KSGFVWLFGA WLKAMNGRQP RVILTKHDQT LKEAVSEALP ASRHCFNTWD 300 TLGQMSEKVG QGFVDEINEV IYGSCKGDEF EERWCEVVDR FDVRDNVWIQ SLYEDREHWV 360 PVYMQDVSLA GMCSADSVLD KYIQRKTTLR AFLDQYKRMV QERVEEEEKA EIETLCKQPG 420 LKSPSPFGKQ MAELYTREMF KRFQVEVLGG VACHPKIESD DGNNKKMTFR VQDYEQNRGF 480 VVVWRSESSE VVCSCRLFEF KGFLCRHAMI VLQMSGELSV PSRYVLNRWR KDARRREAVV 540 SDLIGGGSSK AQRYTDLCLR SLKLSEEASL SEESYNTVMN VLNEAFRKCE ITSNVIHSVE 600 ESDSDAAHEE HNNNNSFNEN VADTGQEHSL QEAWKETDLQ EQRHRYSILD DYLSAQQVSH 660 EMGQISMMAS NRNGYSTSHQ NIHSLGQSIT QQRLYETVRC SLNQVCITSN IYFIGELLSW 720 FN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597789.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597789.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1 | ||||
Swissprot | Q5UBY2 | 0.0 | FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0D3A4J2 | 0.0 | A0A0D3A4J2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g022120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19990.2 | 0.0 | FAR1-related sequence 1 |