PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 572aa MW: 65390.4 Da PI: 7.0622 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.4e-22 | 125 | 221 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f kvl+ sd++k+g +vl k++a e+ + s++++ +d +g +W++k++ r++++r+++t+GW+eF+k ++L +gD +vF + +++e XP_013596928.1 125 FTKVLSASDTNKKGSFVLNKRHAIEClplLLT--PSQEVIAKDIHGHEWNFKHTLRGTPQRHLFTSGWNEFAKGKDLVVGDCFVFL--RGENGES 215 89*************************86444..3559************************************************..3478888 PP EEEEE- CS B3 93 vvkvfr 98 +v++++ XP_013596928.1 216 RVGIRK 221 999987 PP | |||||||
2 | Auxin_resp | 86.6 | 4.7e-29 | 248 | 327 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a +a++ k++F v+Y+Pr+ s+F v++ek+ + +++k+svG+Rf m+fe+ d+se+r++Gt+vgv+d+++ +W+nS+WrsL+ XP_013596928.1 248 ALNAIERKCMFVVFYKPRS--SQFLVNFEKFIDGVNRKFSVGSRFLMKFEGRDFSEIRYYGTIVGVKDFST-HWKNSEWRSLE 327 6789**************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-32 | 116 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-25 | 122 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.40E-22 | 124 | 221 | No hit | No description |
Pfam | PF02362 | 7.7E-19 | 125 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.816 | 125 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-17 | 125 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-25 | 248 | 326 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.178 | 461 | 543 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.35E-5 | 464 | 536 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MASDQIMHVQ PESLATDGTN NYLYNQLWKL CAGPLFHLPK VGEKINYFPQ GHIEQLVTSM 60 NDELCQLKPI FDIPSKICCN VFSIKLKVET TTDEIYAEIS LLPDTSEVEI PTPKPENNIQ 120 NINYFTKVLS ASDTNKKGSF VLNKRHAIEC LPLLLTPSQE VIAKDIHGHE WNFKHTLRGT 180 PQRHLFTSGW NEFAKGKDLV VGDCFVFLRG ENGESRVGIR KSAHHQQHNI PSPVISKQSM 240 HHGVVATALN AIERKCMFVV FYKPRSSQFL VNFEKFIDGV NRKFSVGSRF LMKFEGRDFS 300 EIRYYGTIVG VKDFSTHWKN SEWRSLEVQW DEAAIISRPD KVSPWEIEPL THSSNIPKSV 360 FLKNKRQSEI NDFGQEIGQT SIQSSMSYSF PSMSKPNYNE QMVQAMKETS TTTEAASYRL 420 FGVDLTFPAK TKDPVQPTHS YKKSKISKIF EEEKVDQIQT KTHTKVCMEG AAERTMDLTI 480 FDGYNQLIDE LERLFDIKDK LHMHNQWKIV FINADGNMML LGDDPWPKFC NTAKEIFIYS 540 EHDAKRGNAD NKFAEGDPRL ATTILPPDVN NN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-113 | 20 | 350 | 16 | 355 | Auxin response factor 1 |
4ldw_A | 1e-113 | 20 | 350 | 16 | 355 | Auxin response factor 1 |
4ldw_B | 1e-113 | 20 | 350 | 16 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596928.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596928.1 | 0.0 | PREDICTED: auxin response factor 20-like | ||||
Swissprot | Q9C7I9 | 0.0 | ARFT_ARATH; Auxin response factor 20 | ||||
TrEMBL | A0A3P6F2Q5 | 0.0 | A0A3P6F2Q5_BRAOL; Auxin response factor (Fragment) | ||||
STRING | Bo7g067390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7653 | 6 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35240.1 | 0.0 | auxin response factor 20 |