PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596917.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 377aa    MW: 42197.3 Da    PI: 6.457
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.3e-073213542154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_013596917.1 321 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 354
                     579*****************************87 PP
2ELK26.81.1e-09275296122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++++++++++++E++
  XP_013596917.1 275 ELKHELKQGFKEKIVDIREEIM 296
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-18110154IPR005540KNOX1
PfamPF037909.5E-17112153IPR005540KNOX1
SMARTSM012569.3E-26160216IPR005541KNOX2
PfamPF037913.5E-19166215IPR005541KNOX2
SMARTSM011886.2E-4275296IPR005539ELK domain
PROSITE profilePS512139.446275295IPR005539ELK domain
PfamPF037892.9E-6275296IPR005539ELK domain
PROSITE profilePS5007111.985295358IPR001356Homeobox domain
SMARTSM003893.8E-10297362IPR001356Homeobox domain
SuperFamilySSF466891.54E-15297362IPR009057Homeodomain-like
CDDcd000863.02E-11298354No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24302360IPR009057Homeodomain-like
PfamPF059201.8E-17315354IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSFTSSHLLP PQEDLPLRHF SDQSHQHPQP HFSETPSLLT ASFLNLPPAA ATADSDFAPP  60
NRGGDSSSAA ATNRRWLSFD SSEIQNTGEG RPEVIDGVNA DGGGEDWKSA SCKAAIVRHP  120
MFEQLLAAHV ACLRVATPVD QIPRIDAQLG ELHAVAAKYS TLGVVLDNKE LDHFMSHYVV  180
LLCSFKEQLQ HHVCVHAMEA ITACWEIEQS LQSITGVSPS ENNGKTMSDD EDDNQVESEV  240
NMFDGSMDGS DCMMGFGPLV PTERERSLLE RVKKELKHEL KQGFKEKIVD IREEIMRKRR  300
AGKLPGDTTS VLKEWWRTHA KWPYPTEEDK AKLVQETGLQ LKQINNWFIN QRKRNWNSNS  360
STSSTPSKNK RKRTGKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351372RKRNWNSNSSTSSTPSKNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596917.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A0D3A2Q00.0A0A0D3A2Q0_BRAOL; Uncharacterized protein
TrEMBLU6JT450.0U6JT45_BRAOL; Uncharacterized protein
STRINGBo1g010750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5