 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013596326.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C2H2 |
| Protein Properties |
Length: 209aa MW: 22537.5 Da PI: 8.104 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013596326.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.9 | 3.6e-05 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ CgksF++ L H +H
XP_013596326.1 87 YKCSVCGKSFPSYQALGGHKTSH 109
9***********99998888777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MALDTLNSPT STTAPPPFLT KPENLESWTK RKRTKRHRTV DQSHPPSEEE YLAICLLMLA 60
RGSSSTNDGN DHHSPPAPPS DHDHRDYKCS VCGKSFPSYQ ALGGHKTSHR KPVSNINCQD 120
TINSGNGSVT NNGNISNGLI GQSGKTHKCS ICFKSFPSGQ ALGGHKRCHY DGGNGNGSNN 180
HGFDLNLPAD HDETLXKSQL SGEESKSVS
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL132978 | 1e-56 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. |
| GenBank | BT029377 | 1e-56 | BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds. |
| GenBank | CP002686 | 1e-56 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
