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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013596223.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
NAC |
| Protein Properties |
Length: 295aa MW: 34146.6 Da PI: 6.3826 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013596223.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 173 | 8.8e-54 | 12 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
ppGfrFhPtdeelv +yLkkkv++++++l +vi+e+d+yk+ePwdL++ ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+
XP_013596223.1 12 PPGFRFHPTDEELVGYYLKKKVASQSIDL-DVIREIDLYKIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVY 105
9****************************.9***************953432234677************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
+++l+g++ktLvfy+grap+g+k+dW++hey
XP_013596223.1 106 L-NSKLIGMRKTLVFYRGRAPNGQKSDWIIHEYY 138
*.999***************************95 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MMGPVDQESS IPPGFRFHPT DEELVGYYLK KKVASQSIDL DVIREIDLYK IEPWDLQERC 60
RIGYEEQKEW YFFSHKDKKY PTGTRTNRAT MAGFWKATGR DKAVYLNSKL IGMRKTLVFY 120
RGRAPNGQKS DWIIHEYYSL ESHQNAPQQQ EEGWVVCRAF KKRTTVPTKR RQIWDSNCFL 180
YDDATLLEPL DKNVLIKRAK HNTDGLAVTP FKQELPSEAN KIVDDGFFGS MYLKSMGDDE 240
LSQLPQLESP SLASDKLPET TSRTGEDDVG AEKRMTDWRA LDKFVASQFL MNGEE
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-50 | 10 | 166 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-50 | 10 | 166 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-50 | 10 | 166 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-50 | 10 | 166 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 5e-50 | 10 | 166 | 19 | 172 | NAC domain-containing protein 19 |
| 4dul_A | 4e-50 | 10 | 166 | 16 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 4e-50 | 10 | 166 | 16 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Uniprot | TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Present in developing xylems (PubMed:16103214, PubMed:17565617). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738278 | 0.0 | KF738278.1 Brassica napus NAC transcription factor 105 (NAC105.1) mRNA, complete cds. |
