 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013596124.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
NAC |
| Protein Properties |
Length: 313aa MW: 35416.7 Da PI: 7.8393 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013596124.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 104.9 | 1e-32 | 77 | 221 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratk..... 79
lp+G++F+P+d+e++ +L++kv+++k ++++ ++ +i++++P++Lp + v+++ + +fF++ +k+y+tg+rk+r+++
XP_013596124.1 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrnlhplIDEFIPtLEGEnGICYTHPEKLPvMstGVSKDGQVRHFFHRPSKAYTTGTRKRRKVRtdeeg 170
799***********9.89*****99996665442222222333336**********4333344455566******************74444555 PP
NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk++++ls + + g kk+Lv+y gr++k+ekt+Wv+h+y+l
XP_013596124.1 171 hETRWHKTGKTRPILS-QAGVAGFKKILVLYtnYGRQKKPEKTNWVIHQYHL 221
5788************.8889**********6658***************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MSWCDDSDDN YDPNLDRASN IDHPSIQLKN QSHSCVTSAP DSKIIIEAPI VMTCSSCGQK 60
IHQQDEQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRNLHPLID EFIPTLEGEN 120
GICYTHPEKL PVMSTGVSKD GQVRHFFHRP SKAYTTGTRK RRKVRTDEEG HETRWHKTGK 180
TRPILSQAGV AGFKKILVLY TNYGRQKKPE KTNWVIHQYH LGHSEDEKDG EPVLSKVFYQ 240
TQPRQCGGST EPKPKSRVNL NRFSYENHAS FGYEHEGKNE ENTQVIREGD VACSFLSFTC 300
DASKGKESFM KKI
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738268 | 0.0 | KF738268.1 UNVERIFIED: Brassica napus NAC transcription factor 10-2-like (NAC10-2.1) mRNA, complete sequence. |
