PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013596090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 192aa MW: 22481.2 Da PI: 8.5422 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.8 | 5.5e-14 | 80 | 138 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r++r+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + +e+ XP_013596090.1 80 RRAKRMVSNRESARRSRMRKKKQIEELQQQVEQLMILNHNLSEKVINLLESNHQILQEN 138 89******************************************999999988888887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-14 | 76 | 140 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.22 | 78 | 141 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-10 | 80 | 136 | No hit | No description |
SuperFamily | SSF57959 | 4.88E-11 | 80 | 132 | No hit | No description |
Pfam | PF00170 | 6.0E-12 | 80 | 138 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 7.17E-17 | 81 | 132 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MITYPKQYME SSSVHRSDHC FDIFEGMPPQ DDHFNSTFLP NANFHVPSQS PNISTRSNNH 60 RFHLDPNGEH VYEGLVPDER RAKRMVSNRE SARRSRMRKK KQIEELQQQV EQLMILNHNL 120 SEKVINLLES NHQILQENSQ LKEKVSSFQL LMAEMLIPVR NVDGGSINDR NLNHHHHLRG 180 ETSTRTNTFF GR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013596090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596090.1 | 1e-141 | PREDICTED: basic leucine zipper 34-like | ||||
TrEMBL | A0A0D3DDF1 | 1e-132 | A0A0D3DDF1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g098020.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6185 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60830.1 | 7e-65 | basic leucine-zipper 70 |