PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595910.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 352aa    MW: 39998.9 Da    PI: 7.4185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.4e-191096195
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffkv+   ++++s+ +++p ++++e     + +kt +l+ + g  W+v++  ++k++++ ++kGW++Fv +n L +gDf++F ++g + fe   +
  XP_013595910.1 10 FFKVF--ISHHSSDSMMIPISYTDELP--RTLPKTAILQGTGGCFWKVEM--KRKRDEVHFGKGWNKFVTDNSLTDGDFLTFVYNGANVFEV--S 96
                    89999..667777779******98775..66999****************..********************************99888844..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-224100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-234103IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-17898No hitNo description
PROSITE profilePS5086313.8178101IPR003340B3 DNA binding domain
PfamPF023629.0E-161094IPR003340B3 DNA binding domain
SMARTSM010191.1E-1710101IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-7251336IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-6253344IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.13256350IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAEDDTPPRF FKVFISHHSS DSMMIPISYT DELPRTLPKT AILQGTGGCF WKVEMKRKRD  60
EVHFGKGWNK FVTDNSLTDG DFLTFVYNGA NVFEVSIYGL GGCKEMRAVT EVEEVKEDSV  120
VSLSSTDSDT SSKSEVANTI SKNKGKSQVV EVEDESEEAE AETCSESTVA KTTTGSRNKG  180
KKKEKVVGSS NEDSDSDYTE ANEDSESDDT EASDQLNAFS ESSNTVAQPK KKRERVTVKK  240
IKDPERYLVD PKNVFFETNV KNRPYELLVS AQLVKDYDLK FKKLVYYTDY HKDGKLQAKT  300
TKWKDNRVCI KKWNRICKRN KLKKGDGILC ELKRKEGFVY AVRIHIVREK DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-16910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595910.10.0PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
SwissprotQ9SZ051e-106Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A0D3DHN60.0A0A0D3DHN6_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RTJ20.0A0A3N6RTJ2_BRACR; Uncharacterized protein
STRINGBo7g116840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.13e-46B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]