PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595507.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 498aa    MW: 53663.2 Da    PI: 7.3553
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.48e-1580118241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  XP_013595507.1  80 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCFNNVD 118
                     689*************************.********986 PP
2TCR51.32.3e-16164203140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C +CkN e
  XP_013595507.1 164 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 203
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-1679119IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.6180204IPR005172CRC domain
PfamPF036388.4E-1181116IPR005172CRC domain
SMARTSM011147.8E-20164205IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.2E-13167202IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGEGDEFPPK TEEFDAPTKK TARQLDFAGG HSQANQAPAT VAVPIPPLQS QLPIRLPKPE  60
SPKPKPRPVV EAGDGTTPLK KKHCNCKHSR CLKLYCECFA SGTYCDGCNC LNCFNNVDNE  120
PARREAIEST LERNPNAFRP KIASSPHDPR DNREVVGGVV MLGKHHKGCH CKKSGCLKKY  180
CECFQANILC SDNCRCLGCK NFEGSEDRLA LFHGEHSHGA AYLQHANAAI TGAVGSSGFA  240
SSPAPKRRKA QDIFFNQAAK DPSINRLGQV SSGKTTSSKP VSRHGGPSKV VYRSLLADII  300
QPQDVKALCS VLVAVSEEAA KTSTEKRLEN QTETSLASSA QDNNNGTEVE KAVSGNEAGA  360
DESNSDGSKG KSLSPETLAL MCDEQDTMLM VAASSNCSVE PPNGQDQGYA EQEKIVLTKF  420
RDCLNRIISY AELKESKCSL SRMDTESPVH AAVKVEQVVQ QGAVTNGVPQ TTIQEPSQLT  480
SSYTQTQQPQ APSEKKDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-308121311132Protein lin-54 homolog
5fd3_B3e-308121311132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595507.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A0D3D2D50.0A0A0D3D2D5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EUY90.0A0A3P6EUY9_BRAOL; Uncharacterized protein
STRINGBo7g003920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein