PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595350.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 335aa    MW: 38281.5 Da    PI: 6.3638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14131177354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  XP_013595350.1 131 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 177
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14132187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-4141180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLHLHPQ NHPWSSLPSF DPTHFPSNPT RYPDPVHYFN  60
KRASSSSSFD YTDGFVSPPM DNHHHQNHLR ILSEALGPIM RRGSSFGFDG EVMGKMSAQE  120
VMDAKALAAS KSHSEAERRR RERINTHLAK LRSILPNTTK TDKASLLAEV IQHMKELKRQ  180
TSLVTETCQV PTESDDLTVD STYNDEEGNL VIRASFCCGD RTDLIHDVIN ALKSLHLRTL  240
KAEIATVGGR VKNVLFLSRD DHEDDGFEYR NDAVEHDDEE KRYNRVSSIE EALKAVIEKC  300
VNNNDENNDN NNLEKSSSGS IKRQRTTKMA NRCYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, specific for vascular tissues. {ECO:0000269|PubMed:20220754}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595350.10.0PREDICTED: transcription factor AIG1
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLA0A0D3DAU00.0A0A0D3DAU0_BRAOL; Uncharacterized protein
STRINGBo7g081980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Jost R, et al.
    Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
    J. Exp. Bot., 2015. 66(9): p. 2501-14
    [PMID:25697796]
  5. Vera-Sirera F, et al.
    A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
    Dev. Cell, 2015. 35(4): p. 432-43
    [PMID:26609958]
  6. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]