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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013595232.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
ARF |
Protein Properties |
Length: 631aa MW: 71227.5 Da PI: 6.564 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013595232.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 78.7 | 6.2e-25 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv a++L +gD++vF + +
XP_013595232.1 115 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTAKRLVAGDTFVFL--RGE 205
88****************************9643..445569************************************************..449 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++el+v+v+r+
XP_013595232.1 206 NGELRVGVRRA 216
999******97 PP
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2 | Auxin_resp | 107.2 | 1.9e-35 | 241 | 320 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a ha++t+s+F+v+Y+Pr+ s+F+++++k+++a+++k++vG Rfkm+fe+eds+err+sGtvvgv+d+++ +W++S+Wr+L+
XP_013595232.1 241 ACHATQTRSMFTVYYKPRT--SQFIISLNKYLEAMSNKFAVGIRFKMRFEGEDSPERRFSGTVVGVKDCST-HWKDSNWRCLE 320
6899**************6..9**********************************************777.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 631 aa
Download sequence Send
to blast |
MRTGEHMYGE LWKLCAGPVV DVPQAEERVF YFPQGHMEQL EASTQQDLNA VKPTKPLFDL 60 PPKILCRVMD VRLQAEKDTD EVYAQIMLMP EGTVDEPVSP DPSPPESQRP KVHSFSKVLT 120 ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFKHI FRGQPRRHLL 180 TTGWSTFVTA KRLVAGDTFV FLRGENGELR VGVRRANRQQ TNMPSSVISS HSMHLGVLAT 240 ACHATQTRSM FTVYYKPRTS QFIISLNKYL EAMSNKFAVG IRFKMRFEGE DSPERRFSGT 300 VVGVKDCSTH WKDSNWRCLE VHWDEPASIS RPDKVSPWEI EPFVTSENVP HSVMPKNKRP 360 RHFSEVSALD VGKTASNLWS SALTQSHEFA QSCIASQRNS PQQCYREATE DAKNSDWPAI 420 PYSATLNNQM VFPVEQKKPE STASYRLFGI DLLSSFIPAT EEKTAPTLPI NITKPTPDSN 480 SDPKSEVSKL SEEKKQEPAQ ASSKEVQSKE NSSARSRTKV QMQGVPVGRA VDLTVLNGYS 540 ELIDDLEKLF DIEGELKSRN QLEIVFTDDE GDMMLVGDDP WPEFCNVVKR IFIWSKEEVK 600 KMTPGNQLRK LLTEVDTTLT TTISKTENHS N
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN979474 | 0.0 | JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds. |