PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594418.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 326aa    MW: 37868.6 Da    PI: 4.739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM415.8e-132013210128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                     +de +++ yL+   ++ +   ee++++ d+++ +P++      ++e+  + F+  +++   + r+    +sg W+  g+dk ++++ +g+  g k
  XP_013594418.1  20 NDEKMMSIYLESINDNGESWPEEFMEDGDVFTKNPSEVF----ESENPFFVFVYPRTE--ASGRTDG-CDSGGWRIIGHDKLIKDEdTGKILGFK 107
                     6999********999998666689**************5....233444444444333..3456666.47899***********99778889*** PP

             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                     k+L f  +++ +g k +Wvm++yrl
  XP_013594418.1 108 KILKFCGETKARGYKRTWVMEQYRL 132
                     ******99***************98 PP
2NAM30.69.6e-1019330818128
             NAM  18 yLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy. 109
                     yL+   ++  +e      + d+y v+P++L  +   +++e+ +  F++r ++           +sg+W+   +d++++s ++e++g k+++ fy 
  XP_013594418.1 193 YLQVIFDSGGNEW-PSYVTNDVYCVHPSTLVdHeDKRSTESGLCIFANRTEACG--YT--DGCESGRWRIMEEDNPIFSMSREVMGYKRVFKFYe 282
                     6666666666555.3355679*********732233345557799999988764..33..33579*****************************5 PP

             NAM 110 .......kgrapkgektdWvmheyrl 128
                            +  + + +  +W+m+eyrl
  XP_013594418.1 283 edkgryfDIVDGEQVLRTWIMEEYRL 308
                     553332212233345678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.55911150IPR003441NAC domain
PfamPF023652.2E-620132IPR003441NAC domain
SuperFamilySSF1019412.75E-2220148IPR003441NAC domain
PROSITE profilePS5100515.419175324IPR003441NAC domain
SuperFamilySSF1019412.48E-21191322IPR003441NAC domain
PfamPF023651.7E-4213308IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDEIRAANYP DIKDDYSKAN DEKMMSIYLE SINDNGESWP EEFMEDGDVF TKNPSEVFES  60
ENPFFVFVYP RTEASGRTDG CDSGGWRIIG HDKLIKDEDT GKILGFKKIL KFCGETKARG  120
YKRTWVMEQY RLPSKWNPKQ DHVVCKIQLL FQTEISFLLS KHFSYSADPL PATQSLTAYG  180
IRLANPQDDG AYYLQVIFDS GGNEWPSYVT NDVYCVHPST LVDHEDKRST ESGLCIFANR  240
TEACGYTDGC ESGRWRIMEE DNPIFSMSRE VMGYKRVFKF YEEDKGRYFD IVDGEQVLRT  300
WIMEEYRLVE EAMKDKVLCV IKRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594418.10.0PREDICTED: uncharacterized protein LOC106302454
TrEMBLA0A0D3AA880.0A0A0D3AA88_BRAOL; Uncharacterized protein
STRINGBo1g091580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-122NAC family protein