PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594184.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 496aa MW: 54928.6 Da PI: 7.0782

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.9	1.5e-34	48	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_013594184.1 48 LPAGVKFDPTDQELM-EHLEAKVLVKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnntq 140 799**********.99**9995543233444334666646******.555666799**************87999999988 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_013594184.1 141 gsgsSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196 877656788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-38	40	215	IPR003441	NAC domain
PROSITE profile	PS51005	32.578	48	215	IPR003441	NAC domain
Pfam	PF02365	3.4E-15	49	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MSKSNHAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPQDWVGLPA GVKFDPTDQE 60 LMEHLEAKVL VKDIKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECDNNTQ GSGSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK 180 NRKPEKTNWV MHQYHLGTHE EEKEGELVVS KIFYQTQPRQ CNWSSTSSLN AIGGGGGEVN 240 SGGGGGEYHM RRDSGNTSGG SCSSSREILN VNHPNQSDEV GGVMAVPAAA TAVPPGLPSY 300 AMDQLSFVPF MKSFDEMARR ETPQTGQATC EDVMAEQHRF RHHHHASSSA TSNHGAHDHH 360 HPQHHHQQQQ RHHAFNISQR THPISTIISP STSLHHASIN ILDDNPYHVH RILLPNENYQ 420 IQQQHQEGEE EHNDGKMGAR SASGLEELIM GCTSSTTHHD VKDGSSSMGN QQEAEWLKYS 480 TFWPAPGSSD NQDHHG

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MSKSNHAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPQDWVGLPA GVKFDPTDQE  60
LMEHLEAKVL VKDIKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDNNTQ GSGSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK  180
NRKPEKTNWV MHQYHLGTHE EEKEGELVVS KIFYQTQPRQ CNWSSTSSLN AIGGGGGEVN  240
SGGGGGEYHM RRDSGNTSGG SCSSSREILN VNHPNQSDEV GGVMAVPAAA TAVPPGLPSY  300
AMDQLSFVPF MKSFDEMARR ETPQTGQATC EDVMAEQHRF RHHHHASSSA TSNHGAHDHH  360
HPQHHHQQQQ RHHAFNISQR THPISTIISP STSLHHASIN ILDDNPYHVH RILLPNENYQ  420
IQQQHQEGEE EHNDGKMGAR SASGLEELIM GCTSSTTHHD VKDGSSSMGN QQEAEWLKYS  480
TFWPAPGSSD NQDHHG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594184.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161574	0.0	AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594184.1	0.0	PREDICTED: uncharacterized protein LOC106302193 isoform X1
Refseq	XP_013661494.1	0.0	uncharacterized protein LOC106366440 isoform X1
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A3P5ZU20	0.0	A0A3P5ZU20_BRACM; Uncharacterized protein
STRING	Bra024152.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]