PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594147.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 350aa    MW: 40238 Da    PI: 6.3384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81e-49101521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                     lppGfrFhP+deelv++yL +++++k+           +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat 
  XP_013594147.1  10 LPPGFRFHPSDEELVCHYLYNRIRAKSdhgdvedD---DvdealkgatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATV 101
                     79**********************99966655441...1556667764699*************87788999*********************** PP

             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  XP_013594147.1 102 SGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                     ***************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-568170IPR003441NAC domain
PROSITE profilePS5100553.80510170IPR003441NAC domain
PfamPF023651.5E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLYN RIRAKSDHGD VEDDDVDEAL KGATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDLSLQDSN  180
YNNGHQTQRF EVNDAPDLNY APNYNNQLQP LLSSPPSTTI DPPRHHDQWE QLMKQSSRII  240
DHPYHHHCQH QSIACGWEHM MIGSMSSSSS HGPDHESLLN LLYADKNNSV NIAADHHDKN  300
YEKILLSSDI ASLDHDKTRM GSSFDVGMVS DLHMECAGLS FETENLLTFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-421017017165NO APICAL MERISTEM PROTEIN
1ut4_B2e-421017017165NO APICAL MERISTEM PROTEIN
1ut7_A2e-421017017165NO APICAL MERISTEM PROTEIN
1ut7_B2e-421017017165NO APICAL MERISTEM PROTEIN
4dul_A2e-421017017165NAC domain-containing protein 19
4dul_B2e-421017017165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594147.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0D3DGM00.0A0A0D3DGM0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E8N40.0A0A3P6E8N4_BRAOL; Uncharacterized protein
STRINGBo7g113180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74