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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013594136.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
MYB |
| Protein Properties |
Length: 342aa MW: 38767.1 Da PI: 4.6811 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013594136.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWT+eEde+l ++++ G g+W++ +++ g+ R++k+c++rw +yl
XP_013594136.1 14 RGRWTAEEDEILTNYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
8*******************************99************97 PP
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| 2 | Myb_DNA-binding | 55.6 | 1.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T+eE+e +v+++ lG++ W+ Ia +++ gRt++++k++w+++l
XP_013594136.1 67 RGNITAEEEETIVKLHSHLGNR-WSHIATHLP-GRTDNEIKNYWNSHL 112
7999******************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MGRAPCCEKI GLKRGRWTAE EDEILTNYIQ TNGEGSWRSL PKKAGLLRCG KSCRLRWINY 60
LRRDLKRGNI TAEEEETIVK LHSHLGNRWS HIATHLPGRT DNEIKNYWNS HLSRKIYAFT 120
AVTGDEHSLK VDDLVLNKPP SSSLEAKNTN KIKKKKGRTS RSSMKKHKQM VTASQCLPQP 180
KELESEISEG WNSGNYEGKS LGAYEWLDGE IERLMSSFVW ECTSEEAVIS MNDDDPDQNK 240
VCESGDNVSC CVDLFEEEQG KLGSLQVDQD MNIEKEREES ILSSNSNESG DKDWWVGLCD 300
SSEVGFGIDD ELLGWEFQGG LTCQSDDLWD LSDFGEIQQV DI
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in cotyledons. Restricted to the cotyledons and primary leaves. {ECO:0000269|PubMed:17419845}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons and young leaves. {ECO:0000269|PubMed:17419845}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ317140 | 0.0 | HQ317140.1 Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 111 (MYB111) mRNA, complete cds. |
| Publications
? help Back to Top |
- Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
Sci Rep, 2014. 4: p. 5018
[PMID:24846090] - Lotkowska ME, et al.
The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
Plant Physiol., 2015. 169(3): p. 1862-80
[PMID:26378103] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Zhou Z,Schenke D,Miao Y,Cai D
Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
Plant Cell Environ., 2017. 40(3): p. 453-458
[PMID:28032363] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Duan S, et al.
Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
Plant Sci., 2018. 268: p. 47-53
[PMID:29362083]
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