PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594063.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 331aa MW: 36678.7 Da PI: 4.5694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.9e-09	177	224	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RR+ +N++f L + l + + +K +K +i A++ +++L XP_013594063.1 177 TKASREKKRREMLNDKFMDLSSFLEPT---RTPKTDKPAIIDDAIRVVNQL 224 6778********************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-11	166	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.043	173	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-7	173	225	No hit	No description
Pfam	PF00010	3.7E-6	177	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-6	179	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-10	180	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MYQSNEDDDD FFAALCFDQS NGGEDPYAFI QTEQGSLFPD FGSSSGVNLQ PEQEQVCNNN 60 IGDQFGSFSG NLPQVCSFTG ENNGLAAFGG DSIGFGSSQL DLGTSYSGLL QQEPHQVCSF 120 RGRNNDSVPR VETEQEQVCC GVVEINSSSS VGGVKEELEE ECSRKRGRTG PCSKPGTKAS 180 REKKRREMLN DKFMDLSSFL EPTRTPKTDK PAIIDDAIRV VNQLRGEAHE LKETNQKLLE 240 EIKSLKAEKN ELREEKLVLK ADKEKMEQQL KSMTTVPSPG FLPSHPAAFH QNKMAVYASY 300 GYYPNMPMMP YLLPPSQRDT SQDQQNCSFA A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	185	RKRGRTGPCSKPGTKASREKKRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594063.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594063.1	0.0	PREDICTED: transcription factor bHLH34
Swissprot	Q9LTC7	1e-151	BH034_ARATH; Transcription factor bHLH34
TrEMBL	A0A0D3D5K2	0.0	A0A0D3D5K2_BRAOL; Uncharacterized protein
STRING	Bo7g040830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-139	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]