PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593917.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 491aa MW: 53607.1 Da PI: 7.3462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	308	355	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_013593917.1 308 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 355 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-16	302	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-9	302	359	No hit	No description
PROSITE profile	PS50888	15.37	304	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-16	304	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	308	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	310	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF MWEKSTEQQQ 60 QSIFDSALSS LVSSPTPSNS NFSGGGGDGF IIRELIGKLG NIGNTSGDIC GAPMNGNVSR 120 SASCYATPMS SPPPMMNRTA PLTEFSGDPG FAERAAKFSC FGSRSFNGRT NSGIPVNNGE 180 IVNSGKLTRV SSTPALKALA SPEFASASRP MIPAGDSPPK LPGEFSRKRK SVSKGKSKEN 240 PLPAASPSPS FSKTAERKEV SEEKGGKRRR KDEGDEEEGN KGTNDTKPPE PPKDYIHVRA 300 RRGQATDSHS LAERVRREKI GERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF 360 LSMKLSSVND TRLEFNVDAL VSKDAMISSS GSRVHESGLR LESLSHHNYN NNSQLHTNFS 420 SNNMMLHSPM KSLEPSALAR GFTHLPTLTQ FTDTISQYQM FSEEDLQSIV GMGVAHNPNH 480 ESQSQNMKIE L

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF MWEKSTEQQQ  60
QSIFDSALSS LVSSPTPSNS NFSGGGGDGF IIRELIGKLG NIGNTSGDIC GAPMNGNVSR  120
SASCYATPMS SPPPMMNRTA PLTEFSGDPG FAERAAKFSC FGSRSFNGRT NSGIPVNNGE  180
IVNSGKLTRV SSTPALKALA SPEFASASRP MIPAGDSPPK LPGEFSRKRK SVSKGKSKEN  240
PLPAASPSPS FSKTAERKEV SEEKGGKRRR KDEGDEEEGN KGTNDTKPPE PPKDYIHVRA  300
RRGQATDSHS LAERVRREKI GERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF  360
LSMKLSSVND TRLEFNVDAL VSKDAMISSS GSRVHESGLR LESLSHHNYN NNSQLHTNFS  420
SNNMMLHSPM KSLEPSALAR GFTHLPTLTQ FTDTISQYQM FSEEDLQSIV GMGVAHNPNH  480
ESQSQNMKIE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	230	SRKRKS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00036	PBM	Transfer from AT5G48560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593917.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488610	1e-172	AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBank	BT002945	1e-172	BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBank	BT005637	1e-172	BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593916.1	0.0	PREDICTED: transcription factor bHLH78
Refseq	XP_013593917.1	0.0	PREDICTED: transcription factor bHLH78
Swissprot	Q9FJL4	0.0	BH078_ARATH; Transcription factor bHLH78
TrEMBL	A0A0D3DBT1	0.0	A0A0D3DBT1_BRAOL; Uncharacterized protein
STRING	Bo7g089350.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]