PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 491aa MW: 53607.1 Da PI: 7.3462 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.6e-08 | 308 | 355 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_013593916.1 308 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 355 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-16 | 302 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-9 | 302 | 359 | No hit | No description |
PROSITE profile | PS50888 | 15.37 | 304 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-16 | 304 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 308 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-10 | 310 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF MWEKSTEQQQ 60 QSIFDSALSS LVSSPTPSNS NFSGGGGDGF IIRELIGKLG NIGNTSGDIC GAPMNGNVSR 120 SASCYATPMS SPPPMMNRTA PLTEFSGDPG FAERAAKFSC FGSRSFNGRT NSGIPVNNGE 180 IVNSGKLTRV SSTPALKALA SPEFASASRP MIPAGDSPPK LPGEFSRKRK SVSKGKSKEN 240 PLPAASPSPS FSKTAERKEV SEEKGGKRRR KDEGDEEEGN KGTNDTKPPE PPKDYIHVRA 300 RRGQATDSHS LAERVRREKI GERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF 360 LSMKLSSVND TRLEFNVDAL VSKDAMISSS GSRVHESGLR LESLSHHNYN NNSQLHTNFS 420 SNNMMLHSPM KSLEPSALAR GFTHLPTLTQ FTDTISQYQM FSEEDLQSIV GMGVAHNPNH 480 ESQSQNMKIE L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 230 | SRKRKS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00036 | PBM | Transfer from AT5G48560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593916.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488610 | 1e-172 | AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | BT002945 | 1e-172 | BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds. | |||
GenBank | BT005637 | 1e-172 | BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593916.1 | 0.0 | PREDICTED: transcription factor bHLH78 | ||||
Refseq | XP_013593917.1 | 0.0 | PREDICTED: transcription factor bHLH78 | ||||
Swissprot | Q9FJL4 | 0.0 | BH078_ARATH; Transcription factor bHLH78 | ||||
TrEMBL | A0A0D3DBT1 | 0.0 | A0A0D3DBT1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g089350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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