PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013593666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 381aa MW: 42951.4 Da PI: 6.5123 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.9 | 1e-08 | 13 | 57 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +r C+ + + +++++C ++ +lC++C + H+ H++v XP_013593666.1 13 ARACDSCVKRRARWYCAADDAFLCQSCDTLVHSAnllarrHERVL 57 578*****************************6688888898875 PP | |||||||
2 | CCT | 68.3 | 2.1e-23 | 323 | 366 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_013593666.1 323 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 366 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-10 | 11 | 58 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.466 | 11 | 58 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-7 | 13 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.18E-9 | 14 | 58 | No hit | No description |
Pfam | PF06203 | 6.1E-18 | 323 | 365 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 323 | 365 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MKSLASAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD TLVHSANLLA RRHERVLLKS 60 ASKHSNHNHN HSPSSPPHEA ATWHHGFTRK PRTPRGSGKK NNLSIFHDLV PEISVEDQTE 120 SCEREEQLIC QVPVLDPTVA EQLLNDVAEA KIEFPIMRSG VMMDDQEDVD NAESCLNGFF 180 PTDMELEEYA TDVESLLGRG LDTESYAMEE LGLSKTEMFK IEKEEETKDM NIGICDDDRD 240 ATAPFEVKEE EKKNVLMLRL NYDSVISTWG GQGPPWTSGE PPERDIDISS WPFVSMVGNV 300 RESQQKHHVG GCLPSSGFGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG 360 RFVKRASLAV SAMNSPLGMN Y |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 333 | 349 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013593666.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189476 | 0.0 | AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593666.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like isoform X2 | ||||
Swissprot | Q8RWD0 | 0.0 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A0D3D6N8 | 0.0 | A0A0D3D6N8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g050630.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|