PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593382.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 198aa MW: 23163.1 Da PI: 8.0234

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	86	131	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++++ ++G+g+Wk+I+r+ k++t+ q+ s+ qky XP_013593382.1 86 KPWTEEEHRLFLEGLDKYGKGDWKKISRKSVKTKTPMQVASHAQKY 131 58*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.73	1	55	IPR017884	SANT domain
SMART	SM00717	0.017	2	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.34E-7	4	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-12	78	139	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.781	80	136	IPR017930	Myb domain
SuperFamily	SSF46689	7.11E-18	82	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-17	83	135	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-12	84	134	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-12	86	131	IPR001005	SANT/Myb domain
CDD	cd00167	2.18E-11	87	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGSKQWTRYE DKLFESLLLV FPENTPNRFE AIAEHLNVPL EEVKHYYKAL VHDINLIESD 60 QYPTTNYPDG IPSQTKHMEK EKKRGKPWTE EEHRLFLEGL DKYGKGDWKK ISRKSVKTKT 120 PMQVASHAQK YFLRQDAKKK AKKRSSIHDI TLIDHAANNV TAPRSDLDST MGQTPSDQQV 180 PQEHHHSDED YLIEKMYT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593382.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593382.1	1e-147	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-44	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D3AEM7	1e-146	A0A0D3AEM7_BRAOL; Uncharacterized protein
STRING	Bo1g142610.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17289	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-61	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]