PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 47685.4 Da PI: 6.9067 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.2e-17 | 134 | 183 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_013593199.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.2 | 9.7e-14 | 226 | 276 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_013593199.1 226 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 276 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 134 | 192 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.7E-9 | 134 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 135 | 191 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 135 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-32 | 135 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-11 | 135 | 192 | No hit | No description |
CDD | cd00018 | 7.34E-26 | 226 | 286 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-17 | 226 | 286 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-9 | 226 | 276 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.672 | 227 | 284 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 227 | 285 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-32 | 227 | 290 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 228 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 266 | 286 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MWDLNDSPHQ TVRQEESEEF CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRANNPL 60 ITHQFFPEME SSVGDNGGGG PGSSFPRSHW FGVQFSQSDL ATGSSVGKPA TVGAVVEPAQ 120 PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK 180 FRGVEADINF NIEDYDNDMK QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE 240 ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDSSIYDE ELNAESSGNP 300 IQHDHNLDLS LGNSVNSKHN GQDMRLKMNQ QDSLHSNEIL GLGPGMVNYI PDSVHQFPGS 360 SNIHGGGGFS LFPVTENHQF EGRTTANQVL ANAAASSGFS PHNHHQIFNS TPTSHQNWLQ 420 TNGFQPPLMR P |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593199.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637468 | 0.0 | HQ637468.1 Brassica napus APETALA2 (APETALA2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593199.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Refseq | XP_013593200.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Refseq | XP_013707660.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | P47927 | 0.0 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A078JCE8 | 0.0 | A0A078JCE8_BRANA; BnaCnng39690D protein | ||||
TrEMBL | A0A0D3DI42 | 0.0 | A0A0D3DI42_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g118400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 0.0 | AP2 family protein |