PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592996.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 402aa    MW: 44378.8 Da    PI: 6.9068
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.2e-06546237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    e + C+ ++e  + lfC+ +   lC  C ++ H        H
  XP_013592996.1  5 ERHPCDFCGERAAVLFCRADTAKLCLPCDQQVHTAnllskkH 46
                    6789******99*******************99544555555 PP
2zf-B_box22.32.7e-074980334
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+++++++++  C++++  lC+dC    H
  XP_013592996.1 49 SQICDNCGNEPVSVRCFTDNLVLCQDCDWDVH 80
                    689************************98777 PP
3CCT69.31e-23356399144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeKrktR+++K+irYesRKa+A++R RvKGrFvk++
  XP_013592996.1 356 RDNAMQRYKEKRKTRRYDKTIRYESRKATADTRLRVKGRFVKAT 399
                     899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-11451IPR000315B-box-type zinc finger
PROSITE profilePS501199.314451IPR000315B-box-type zinc finger
CDDcd000212.06E-8851No hitNo description
PROSITE profilePS501198.6034794IPR000315B-box-type zinc finger
PfamPF006434.0E-54980IPR000315B-box-type zinc finger
CDDcd000212.79E-85180No hitNo description
SMARTSM003360.695294IPR000315B-box-type zinc finger
PROSITE profilePS5101715.12356398IPR010402CCT domain
PfamPF062035.8E-18356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSSSERHPCD FCGERAAVLF CRADTAKLCL PCDQQVHTAN LLSKKHVRSQ ICDNCGNEPV  60
SVRCFTDNLV LCQDCDWDVH GSCSVSDAHV RSAVEGFSGC PSALELAALL GVDLGGRKEE  120
NEGSSTTMMM MTTMESFGMQ LDSWVTGSNV LQELVVPVPK ETTSFRKRGS SCGRYKQVLC  180
KQLEELLNNG DGEAREGLMV PEMTERMGRA RDAEEINSGG EVIQQPPTTS FTSLLWNADN  240
PSASSGGGRT TQIWDFNLGQ SRDTKDAYVT KDDKSFTINS FVDLMNDTCS TKPKGVKQIC  300
QDDCYRPTSS QVPATSESSN LPLTFSSEKG SNSAASCKTT RVVATKSDLE QLAQYRDNAM  360
QRYKEKRKTR RYDKTIRYES RKATADTRLR VKGRFVKATE AP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.116400.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891941e-98AC189194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592996.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A0D3D6C50.0A0A0D3D6C5_BRAOL; Uncharacterized protein
STRINGBo7g048510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]