PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592976.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 550aa    MW: 61364.3 Da    PI: 5.6784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.9e-48451711128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelvv+yLk+k+++kkl++  +i e+d+yk++P++Lp k  +++++++w+fFs+rd+k+ +g r++rat++gyWkatg d+ ++
  XP_013592976.1  45 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-AAIGETDVYKFDPEELPgKaLHNTGDRQWFFFSPRDRKQ-HGGRSSRATDRGYWKATGVDRIIK 137
                     579***************************.88***************6434556889**********97.699********************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ vg kktLvf++grapkge+tdWvmhey+l
  XP_013592976.1 138 C-NSRPVGEKKTLVFHRGRAPKGERTDWVMHEYTL 171
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5540194IPR003441NAC domain
PROSITE profilePS5100552.86945194IPR003441NAC domain
PfamPF023652.0E-2647171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010224Biological Processresponse to UV-B
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:1900409Biological Processpositive regulation of cellular response to oxidative stress
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MQSYWNIRSS SQILNLHQQK SLGFFFSSPV METSRGSCRA GDRVLAPGFR FHPTDEELVV  60
YYLKRKIRRK KLRVAAIGET DVYKFDPEEL PGKALHNTGD RQWFFFSPRD RKQHGGRSSR  120
ATDRGYWKAT GVDRIIKCNS RPVGEKKTLV FHRGRAPKGE RTDWVMHEYT LHKEELEKCG  180
DVKDNFVLYK IFKKSGSGPK NGEHYGAPFV EEEWAEEDDE VDEADAVHVP TNQLMVSVCL  240
GSNNNIWADG GLNQSELNEN DIQELMRQVS EETGVNSHVA NNNPVNLAED EYLEIDDLLL  300
PGSEPSYVDK QGSAVLNDND FFDVDSYIGD FDATNPQSEP VGVGLNNGVK NSLPVNTFPV  360
TDQANNNQFP QQTWKNQDSN WPLRNSYTRK ISSESWTHEL NNDEVTVCKF GEAPGIGGAS  420
EFINPIASGI SIAKGEEATK DESSQFSSSV WSFLESIPAS PAFASENPIV NLNIVRISSL  480
GGRYRLGSKS TSTNVVIAVN DSEAKRNKCG GYNKKNNHKG FFCLSIIGAL CALSWVMMGT  540
MGVSGRSLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-444520020174NAC domain-containing protein 19
3swm_B8e-444520020174NAC domain-containing protein 19
3swm_C8e-444520020174NAC domain-containing protein 19
3swm_D8e-444520020174NAC domain-containing protein 19
3swp_A8e-444520020174NAC domain-containing protein 19
3swp_B8e-444520020174NAC domain-containing protein 19
3swp_C8e-444520020174NAC domain-containing protein 19
3swp_D8e-444520020174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572KIRRKKLR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00176DAPTransfer from AT1G32870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592976.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747560.0KF974756.1 Brassica napus NAC transcription factor 13-1 (NAC13-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592976.10.0PREDICTED: NAC domain-containing protein 13
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLA0A0D3D7A30.0A0A0D3D7A3_BRAOL; Uncharacterized protein
STRINGBo7g057730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.10.0NAC domain protein 13
Publications ? help Back to Top
  1. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  2. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]