PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592948.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 519aa    MW: 57739.9 Da    PI: 6.0712
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27291344256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  XP_013592948.1 291 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 344
                     689*****************.********************************96 PP
2Response_reg264.7e-103712916109
                     HHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
    Response_reg  16 qalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                     + l++ +y +v+++ d +eal  + ++   +++ ++ ++ +  d  e +k +++++  lp i++++    +++ +++ +Ga +fl Kp +pe+l 
  XP_013592948.1  37 SKLDSMDY-IVTTFYDESEALSAVVKSPesFHIAIVEVNTSAED--ESFKYLEAAKGLLPTIMISDDHCIATTMKCIALGAVEFLQKPLSPEKLK 128
                     5578899*.***************776667********999988..899***99999************************************98 PP

                     H CS
    Response_reg 109 k 109
                     +
  XP_013592948.1 129 N 129
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-1017136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.0E-1217142No hitNo description
PROSITE profilePS5011018.37921135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-535129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.48E-539134No hitNo description
PROSITE profilePS5129416.406287346IPR017930Myb domain
SuperFamilySSF466893.85E-18289346IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-26289346IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-25291344IPR006447Myb domain, plants
PfamPF002491.5E-7293341IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MVCTANDLSK WENFPKGLRV LLLDGGRDGI SAAETRSKLD SMDYIVTTFY DESEALSAVV  60
KSPESFHIAI VEVNTSAEDE SFKYLEAAKG LLPTIMISDD HCIATTMKCI ALGAVEFLQK  120
PLSPEKLKNI WQHVVHKAFN DGGASVSESL KPVKDSVVSM LNVDTNMTID DKDPAPSTPQ  180
LRQVSRLLDQ ENRNCSVENV NSPTEKENTE GHDIGESKSV DTTNHEDNVI VKEEKGDGEK  240
EEEQGQTEEQ KQEEGETGDS VNFHKKEDET NKPINKSSGN KNLSSNKASR KKVDWTQELH  300
KKFVQAVEQL GVDQAIPSRI LELMKVDGLT RHNVASHLQK FRMHRRTILP KDDHNHRWIQ  360
SRENHRQIQR QYNGFQQQHR PVMAYPVWGL PGVHPPGAVP PLWPPALPSA GQLPPWHFKP  420
PYPTLNGNTW GYPVGPPVTG TFFSPPITGT FSTPPANQLD EEMIDQVVKE VISKPGMPLP  480
LGLKPPSAES VLTELLRQDI SAVPSSSSSC QINGSRRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16292343758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592948.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592946.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_013592947.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_013592948.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_013592949.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0D3DES10.0A0A0D3DES1_BRAOL; Uncharacterized protein
STRINGBo7g105690.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]