PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 361aa MW: 40062.8 Da PI: 8.6761 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5.1e-32 | 214 | 269 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ XP_013592390.1 214 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 269 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.78E-18 | 211 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-28 | 211 | 272 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.204 | 211 | 271 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-26 | 214 | 269 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.8E-8 | 216 | 267 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MMVQKMEVDH AHKMQRCHEY AEALKEEQKK IQVFQRELPL CLELVTQAIE ACKKELSVTS 60 TTSERYSEQT ASVCGGPVLE EFIQIKKSNN EENGEHESPR EVEKSDVDSK KSDWLRSTHL 120 WNHSQDPDTT VVVAKKARVV EVKPNSHNRG GFQPFQKEQK RVFSETDLHP AVKATTPAPA 180 PATTTCSTTE VGGVDKAGEE QVQKQQLQTQ TQRKQRRCWS PELHRRFLHA LQQLGGSHVA 240 TPKQIRDHMK VDGLTNDEVK SHLQKYRLHT RRPATAQGNG NSQQPQLVVV GGIWVPSPQD 300 FPSPSDVANN KGDGVYAPVT SQAPVPPQSP KRSVERSSGR CNSPAASSST NTTTTSASPV 360 S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592390.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063886 | 2e-63 | AY063886.1 Arabidopsis thaliana unknown protein (At1g68670) mRNA, complete cds. | |||
GenBank | AY087993 | 2e-63 | AY087993.1 Arabidopsis thaliana clone 40196 mRNA, complete sequence. | |||
GenBank | AY091241 | 2e-63 | AY091241.1 Arabidopsis thaliana unknown protein (At1g68670) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592390.1 | 0.0 | PREDICTED: transcription factor LUX-like | ||||
Swissprot | Q8VZS3 | 1e-144 | HHO2_ARATH; Transcription factor HHO2 | ||||
TrEMBL | A0A078HMN0 | 0.0 | A0A078HMN0_BRANA; BnaC06g30320D protein | ||||
TrEMBL | A0A0D3CZ15 | 0.0 | A0A0D3CZ15_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g107160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-119 | G2-like family protein |
Publications ? help Back to Top | |||
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