PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013592149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 523aa MW: 58218.7 Da PI: 6.0614 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 448.5 | 4.5e-137 | 155 | 523 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +L+ecA+av++ d +++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ + e l+++++++e++P++kf++ XP_013592149.1 155 GTLYECAKAVENCDVAMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYES 246 689****************************************************************9...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+ ++ le +g+rL k+Ae +gvpfef+ +a ++++e XP_013592149.1 247 ANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPRVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG-AALCCTEVE 340 *****************************************************999999**************************.899****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L v++gEalaVn+ l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+v XP_013592149.1 341 IEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINV 435 *********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++l+re+vn++aceg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr XP_013592149.1 436 EQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 523 ************************************************************65.*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.646 | 127 | 504 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-134 | 155 | 523 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 523 aa Download sequence Send to blast |
MEATQKHIIQ DGSSMFYHQP SVKQMDISVQ TFDSYCTLES SSGTKSHPCP NNNITSSTTS 60 FSSNGSPVSH SNNNNNTSHL SPDNNNSPLS GSSATNNNET ELSLMLKDLE TAMMEPDLDN 120 SFNGYEFGQQ QQQHRAASSA MYRSMEMISR GDLKGTLYEC AKAVENCDVA MTDWLISQLQ 180 QMVSVSGEPV QRLGAYMLEG LVARLASSGS SIYKALRCKD PTGPELLTYM HILYEACPYF 240 KFGYESANGA IAEAVKNESF VHIIDFQISQ GGQWVSLIRA LGARPGGPPR VRITGIDDPR 300 SSFARQGGLE LVGQRLGKLA EMCGVPFEFH GAALCCTEVE IEKLGVRNGE ALAVNFPLVL 360 HHMPDESVTV ENHRDRLLRL VKRLSPNVVT LVEQEANTNT APFLPRFVET MNHYLAVFES 420 IDVKLARDHK ERINVEQHCL AREVVNLIAC EGVEREERHE PLGKWRSRFH MAGFKPYPLS 480 SYVNATIKGL LESYSEKYTL EERDGALYLG WKNQPLITSC AWR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-61 | 156 | 523 | 7 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bol.7829 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013592149.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592147.1 | 0.0 | PREDICTED: scarecrow-like protein 5 isoform X1 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A0D3CPS9 | 0.0 | A0A0D3CPS9_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g022330.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|