PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013592035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 732aa MW: 84596.5 Da PI: 6.9468 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.6 | 6.5e-26 | 16 | 101 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++++eHnHel p XP_013592035.1 16 YYKDYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGTKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVEEHNHELLP 101 8****************************************99887....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-23 | 16 | 101 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.7E-25 | 219 | 310 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 8.3E-10 | 497 | 531 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.868 | 497 | 533 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 508 | 535 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MLSQMEFETH EDAYTYYKDY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGTKQQSDD 60 AINPRASPKI GCKASMHVKR RPDGKWYVYS FVEEHNHELL PEQSHFFRSH RVESSDPRLR 120 RNKKSNNNPL ADCSKHLTAY HDLAFLDGYT RNNNNQRDRG RRLAIESLDA QILLEFLTRM 180 QEENHKFFYA VDFNEDNVLR NVFWVDAKGI DDYKSFNDVV SFDTSYVVSK FKLPLVVFVG 240 VNHHVQPVLL GCALVADESV YSYVWLMESW LMAMGGLMPR VMLTDQDDGI KAAVSAVLPE 300 TRHCYCLWYL LDRLPRNLDY WGMWQDAFLK KFFKCVYGSW SEEEFDRRWV KLIDKFHLRD 360 VQWMRCLYDE RSLWAPTFMR GVTFAGMSTR YRSESVNSMF DRYVQCETSL KDFLEGYGLM 420 LEDRYEEEAK ADFDAWHEAP ELKSPSPFEK QVLLVYTHVV FRRFQIEVLG AAACHLTKES 480 EGGTTYSVKD FEDDQKYLVE WDESKSDIYC SCRSFEYKGY LCRHAIVVLQ MSGVFTIPIN 540 YVLQRWTNAA RNRHQISGNL ELVQCNIRRF NDLCRRAVIL GEEGSLSQES YDVAMFAMKE 600 AFKLCAIKGN TIEHPTIDHI HENNQYGSTS KQIGLEHNIQ HVGNAAGQGE TIKEKRSSLN 660 NTSKKAKHVT ESGNVGEGSQ EGFQHVVAGP RPFQAGLAAQ FHNTIPAVFQ NVIPTEFHNI 720 QATNMHQNNP PG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013592035.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592035.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A3P6H3F8 | 0.0 | A0A3P6H3F8_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g120360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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