PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013591675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 333aa MW: 36761.1 Da PI: 7.8158 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104 | 1.4e-32 | 171 | 226 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep++VNaKQy++I++RR++Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF XP_013591675.1 171 EPVFVNAKQYHAIMRRREQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 226 9****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.1E-38 | 168 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.704 | 169 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.2E-27 | 171 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-23 | 172 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 174 | 194 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.9E-23 | 203 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MVELCRYSSC EDSLLGVMHQ MNKKDSTLPY LNTSISWGGV DARPEHMQTT KQISFQDLDS 60 PSSQSTCQSY TEVASSGDDN PSIQISFSTK SGSEETQQKG FATHPNSASM TGVPSIHFAP 120 TQANFSFHYA DPQIGGLLAP TYLPHAPTCH PQMVGMVPGR VPLPVEITET EPVFVNAKQY 180 HAIMRRREQR AKLEAQNKLI KARKPYLHES RHVHALKRPR GSGGRFLNTK QLLQESEQAA 240 AKEQERDKLV QQGSKKANMS RLDAHMLQHN KDRGSTTSGS DITSVSDGAD IFGHAEFQLS 300 GFPTTQTNRA MLVHGQSNDM HGGGDLHHFS IHI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 171 | 231 | 3 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013591675.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591675.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Swissprot | Q93ZH2 | 0.0 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A078JS78 | 0.0 | A0A078JS78_BRANA; BnaCnng68450D protein (Fragment) | ||||
STRING | Bo6g090310.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3349 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-176 | nuclear factor Y, subunit A3 |