PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591183.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 230aa MW: 25808.1 Da PI: 7.6025

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	112	155	4	52
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 a n +E+rRR +i++++e+L++l P++ kK + a++L ++ I+ XP_013591183.1 112 ARNTAEKRRRTDIKTKIENLKQLTPNC-----KKRDIASTLDCIIDNIR 155 789***********************9.....89999999999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.0E-10	105	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-11	105	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.843	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.46E-8	111	159	No hit	No description
Pfam	PF00010	5.7E-6	112	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-7	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSNMNNDQES IQFWSSLLHS LADSDPKDDH LSEISSPIMV MSTSMAIDVS PKPFNAPRDG 60 HKAGPQKAIA ETGDISIDEG GQRSAEKHIE KEGEKEEIKN FGKNKRPRTN EARNTAEKRR 120 RTDIKTKIEN LKQLTPNCKK RDIASTLDCI IDNIRWMKHY VESQSMGPML PLGMKMDFPA 180 PWFPSIPPNF IMPPFSGFTP GETSCAYGNQ NIEPSTTKGF NNQPHSSRSM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591183.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591183.1	1e-172	PREDICTED: putative transcription factor bHLH056 isoform X3
TrEMBL	A0A0D3CXW3	1e-161	A0A0D3CXW3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GTI4	1e-161	A0A3P6GTI4_BRAOL; Uncharacterized protein
STRING	Bo6g097200.1	1e-161	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	5e-11	bHLH family protein