PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 231aa MW: 27084.9 Da PI: 10.0581 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 45.3 | 1.9e-14 | 115 | 164 | 5 | 55 |
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 Wt+e H +F++a++ L G e Pk+il +m+v++Lt +v+ HL Y+ XP_013591135.1 115 LWTCENHLKFLSAISYL-GDEDSHPKSILSIMNVPSLTHREVARHLESYKA 164 5****************.9999**************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 13.017 | 1 | 61 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 9.0E-7 | 1 | 94 | No hit | No description |
SuperFamily | SSF52172 | 4.98E-5 | 1 | 93 | IPR011006 | CheY-like superfamily |
SuperFamily | SSF46689 | 8.87E-10 | 109 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-13 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-11 | 115 | 165 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MPHIDSHSFY TSLLTKDIPL ILISSEGKRN KSSNSLEERA CYFLTRPIHE KDINNMLQHV 60 LPNKSQKLEK LSIPNNAEDV SEVRINQMKA FRENLRRQRT EVNNIESKVR RRSNLWTCEN 120 HLKFLSAISY LGDEDSHPKS ILSIMNVPSL THREVARHLE SYKAKVDRMN ETLSRKEWIP 180 TNKTFEYPSD YKYPFTLSNI AKQKNSGKNL IRERDTKLKF YLGGQMDLSF I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591135.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189489 | 1e-151 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591135.1 | 1e-171 | PREDICTED: putative two-component response regulator-like APRR6 | ||||
Swissprot | Q9C9F6 | 2e-60 | APRR6_ARATH; Putative two-component response regulator-like APRR6 | ||||
TrEMBL | A0A3P6H5P5 | 1e-170 | A0A3P6H5P5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g106810.1 | 1e-127 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13685 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68210.1 | 8e-63 | pseudo-response regulator 6 |