PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 198aa MW: 23226 Da PI: 4.5697 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.5 | 1.6e-20 | 8 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+GfrF+Ptd e+ +++L++k+ +++++ +v +e+ di++ P+dLp + +e++wyf++++ + + ++++Wk+ g+++ vl+ XP_013590909.1 8 LPVGFRFRPTDCEISKYFLTRKALEQRMRGPNVPEEChDIFSRRPRDLPG--YPRETHWYFYCRKLDGQV----TYN--SHSIWKQIGEETGVLD 94 79****************************99999999***********4..34789******9876543....333..3579***********9 PP NAM 95 k..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128 +++lvg+k+ ++f ++ ++ + +W+m+e++l XP_013590909.1 95 PknNDTLVGIKRPFTFVdhkeepddilLSDEDEPPQYNWFMDEFSL 140 8666677**********766555554436777888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-26 | 7 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.095 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-14 | 9 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEPKHKALPV GFRFRPTDCE ISKYFLTRKA LEQRMRGPNV PEECHDIFSR RPRDLPGYPR 60 ETHWYFYCRK LDGQVTYNSH SIWKQIGEET GVLDPKNNDT LVGIKRPFTF VDHKEEPDDI 120 LLSDEDEPPQ YNWFMDEFSL PLTISETDWV VCHVFRKNNE PESEEEGENE EKETVKAESL 180 DLLMEKDGNV LPPSPSPP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590909.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232543 | 0.0 | AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590909.1 | 1e-146 | PREDICTED: protein ATAF2-like | ||||
Refseq | XP_013701074.1 | 1e-146 | NAC domain-containing protein 104-like | ||||
TrEMBL | A0A078FEP1 | 1e-144 | A0A078FEP1_BRANA; BnaC06g13440D protein | ||||
TrEMBL | A0A0D3CT73 | 1e-144 | A0A0D3CT73_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g064960.1 | 1e-145 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 1e-79 | NAC family protein |