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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 289aa MW: 31872.2 Da PI: 7.4312 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.7e-10 | 200 | 241 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq XP_013590899.1 200 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 241 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.237 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-12 | 193 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-12 | 193 | 245 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-13 | 195 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 200 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MALLNDHPNE PNYISKQNSS SDDPSSPENY GLASSGSTMN SDHQQNHQGV VFYPSRESVE 60 DHNSLLDFNG SSFLNFDNNN HHESFPHPTI SCGGGFSFLE GNNMSYGFTN WSQHHMDIIS 120 PRPIETPGIN QGHKDWLYSD STAVTTGSRH ESLSPKSAGN KRSYTGESIQ PPSKKPRSSG 180 NGKAKPKPIT PPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL 240 QLQVKVLATD EFWPAQGGKA PDISQVRDAI DAILSSSQRD KNSTPITNK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590899.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590899.1 | 0.0 | PREDICTED: transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 1e-142 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A0D3CYE5 | 0.0 | A0A0D3CYE5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g101000.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-144 | ROOT HAIR DEFECTIVE6 |