PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590801.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 713aa    MW: 80128.6 Da    PI: 7.4397
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.67.8e-172679356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++++++q++ Le++F+++++p+  + ++L ++l+L+++q+k+WFqN+R++ k
  XP_013590801.1 26 IYHRHSNHQIQKLEAYFKECPHPDDLQQRKLGEELKLKQKQIKFWFQNKRTQAK 79
                    567899********************************************9987 PP
2START120.22.7e-382394505206
                     HHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                      a +e++ +++ eep+W kss       ++en+++  +k +   +     ++e +++++v + ++ +lv+ lld+  +W + +     ka+t+ v
  XP_013590801.1 239 GAVTEVIILIQTEEPMWIKSSidsrlviDQENYEKKFTKNSH--FkilsARIESSKEVAVIPLDAKNLVNMLLDTE-KWANLFStivnKAKTIHV 330
                     678899999**************9999999999988888855..455999**************************.77777766666******* PP

                     ECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
           START  85 issggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                     ++s     lm+ +l  lspl p R+f+++R+++ql+++ wvi+dvS  + ++   + +   + ++pSg+li+ ++nghskvtw+ehv++++++  
  XP_013590801.1 331 LESSK---LMYEQLHILSPLLPpREFMILRCCQQLEEDLWVIADVSYHQVAFEF-EFGTPACYKRPSGFLIQAMPNGHSKVTWMEHVEVNDKVRa 421
                     *9975...666777777788777*****************************98.788888899*****************************99 PP

                     HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 178 hwllrslvksglaegaktwvatlqrqcek 206
                     h ++r l+  g   ga++w+atl+r ce+
  XP_013590801.1 422 HRIYRDLLCGGFGYGARRWTATLERMCER 450
                     ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-16783IPR009057Homeodomain-like
SuperFamilySSF466893.21E-15981IPR009057Homeodomain-like
PROSITE profilePS5007115.1752181IPR001356Homeobox domain
SMARTSM003899.4E-152385IPR001356Homeobox domain
CDDcd000869.33E-152482No hitNo description
PfamPF000463.6E-142679IPR001356Homeobox domain
PROSITE profilePS5084838.913226453IPR002913START domain
SuperFamilySSF559614.81E-25228451No hitNo description
CDDcd088751.38E-92230449No hitNo description
SMARTSM002345.9E-23235450IPR002913START domain
PfamPF018525.6E-31240450IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-6274414IPR023393START-like domain
SuperFamilySSF559618.38E-8474677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MASGRDSSSS DEQETSLYTS DGDKRIYHRH SNHQIQKLEA YFKECPHPDD LQQRKLGEEL  60
KLKQKQIKFW FQNKRTQAKV QNEKADNASL RTENMKIRRE NEAMQEALNT VTCPPCGGPH  120
PGQVDRKLYF QNLRAHNAYL REERDKLSIW VNKTEGHPKP IVNALAYLHG PSLHASTSNN  180
PHVTYGTSSN HLVEPPSLLR ELYLREHISI AQPPQPRQLQ CSPPLSNMEK VMMTEAMVGA  240
VTEVIILIQT EEPMWIKSSI DSRLVIDQEN YEKKFTKNSH FKILSARIES SKEVAVIPLD  300
AKNLVNMLLD TEKWANLFST IVNKAKTIHV LESSKLMYEQ LHILSPLLPP REFMILRCCQ  360
QLEEDLWVIA DVSYHQVAFE FEFGTPACYK RPSGFLIQAM PNGHSKVTWM EHVEVNDKVR  420
AHRIYRDLLC GGFGYGARRW TATLERMCER LSLYSVPDFP TTDDPGVVKT INGRRRVMDL  480
GERMLKNFAW ILNMPEKSEF SQQSATNSSG VNISVRVNKE AGQPPGLIVC ACSSLCLPLA  540
PLQVYNFLKN LEVRHQWDVL CHASPVTEVA RFVTGANNKN CVNILQPSSA ADSGDLMIIQ  600
DSFIDALGGM VVYAPVDLNT AHAAVSGNVN PSGIPILPSG FVISRDGRPS ATAELGGGRD  660
NCKTLLTVAF QILVTGPTIS EELQMDKWTT TVDTLISSTI TRVKAMLNCH DGQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590801.10.0PREDICTED: homeobox-leucine zipper protein HDG9-like
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLA0A0D3CTZ10.0A0A0D3CTZ1_BRAOL; Uncharacterized protein
STRINGBo6g069620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]