PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 25229.2 Da PI: 5.6958 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 42.5 | 1.3e-13 | 112 | 154 | 20 | 59 |
S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 rsYYrC ++ +Cp+kk+v+r +edp ++ +tY+++H+++ XP_013590683.1 112 RRRSYYRCNHQkvyKCPAKKQVQRLDEDPYMLRVTYRSSHTCQ 154 569*******99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-12 | 110 | 154 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-12 | 110 | 155 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-13 | 111 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-8 | 111 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.749 | 111 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEEILSIIFN GINQVEELKF NLSAQESPES LSSSLGSIST LFRDANERLG TLLERKNAFV 60 PNQPEPKTVQ VSGLDQMMMQ IEPGLKQDHR VREGVKSIDS GPGCAFSTPR PRRRSYYRCN 120 HQKVYKCPAK KQVQRLDEDP YMLRVTYRSS HTCQFSTTSS FSSTATTPVN YGPNVHNMAD 180 LMFENTDSVV PFCEPYLNND SLVPGAASYE DSWNSTWQSY DMS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590683.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590683.1 | 1e-168 | PREDICTED: WRKY transcription factor 55-like isoform X3 | ||||
Swissprot | Q9SHB5 | 1e-39 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A0D3CTF7 | 1e-135 | A0A0D3CTF7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FU37 | 1e-135 | A0A3P6FU37_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g066790.1 | 1e-136 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.2 | 2e-25 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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