PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013590683.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 223aa MW: 25229.2 Da PI: 5.6958

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013590683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	42.5	1.3e-13	112	154	20	59
S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 rsYYrC ++ +Cp+kk+v+r +edp ++ +tY+++H+++ XP_013590683.1 112 RRRSYYRCNHQkvyKCPAKKQVQRLDEDPYMLRVTYRSSHTCQ 154 569*****99999************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-12	110	154	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-12	110	155	IPR003657	WRKY domain
Pfam	PF03106	1.0E-13	111	154	IPR003657	WRKY domain
SMART	SM00774	5.3E-8	111	155	IPR003657	WRKY domain
PROSITE profile	PS50811	11.749	111	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEEILSIIFN GINQVEELKF NLSAQESPES LSSSLGSIST LFRDANERLG TLLERKNAFV 60 PNQPEPKTVQ VSGLDQMMMQ IEPGLKQDHR VREGVKSIDS GPGCAFSTPR PRRRSYYRCN 120 HQKVYKCPAK KQVQRLDEDP YMLRVTYRSS HTCQFSTTSS FSSTATTPVN YGPNVHNMAD 180 LMFENTDSVV PFCEPYLNND SLVPGAASYE DSWNSTWQSY DMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013590683.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590683.1	1e-168	PREDICTED: WRKY transcription factor 55-like isoform X3
Swissprot	Q9SHB5	1e-39	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	A0A0D3CTF7	1e-135	A0A0D3CTF7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FU37	1e-135	A0A3P6FU37_BRAOL; Uncharacterized protein
STRING	Bo6g066790.1	1e-136	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.2	2e-25	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]