PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590557.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 262aa    MW: 29408.8 Da    PI: 7.8084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09158205455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  XP_013590557.1 158 SHSLAERVRRGKINERLKCLQDIVPGC----YKAMGMATMLDEIINYVQSLQ 205
                     8*************************8....355999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.89E-9152209No hitNo description
SuperFamilySSF474591.83E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLDSLFFHHH QHQPLPDHFP  60
GKSPENNFHQ GVFIPSNIHN KNDDSSLDSK KRKTLMASMS TSENSVSDQT SSAQVSINGN  120
VLTKNNSSRR GKRLKNIEDK KEREVVHVRA KRGQATDSHS LAERVRRGKI NERLKCLQDI  180
VPGCYKAMGM ATMLDEIINY VQSLQNQVEF LSMKLTAASS YYDFNSEADA VDSMQKAKAR  240
EAVEMGQGRD GNTVFHSSSW TL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590557.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590557.10.0PREDICTED: transcription factor BEE 3
RefseqXP_013705420.10.0transcription factor BEE 3-like
RefseqXP_022567487.10.0transcription factor BEE 3-like
SwissprotQ8GWK71e-151BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D3D0G90.0A0A0D3D0G9_BRAOL; Uncharacterized protein
STRINGBo6g118140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-141BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]