PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589285.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 278aa    MW: 32128.9 Da    PI: 9.5345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.52.9e-15225271148
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                     +ppG+rFhPt+eel+ +yL+kk+++ k++l +vi++vd++k+ePwd++
  XP_013589285.1 225 VPPGIRFHPTEEELLEYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQ 271
                     69****************************.9**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.88649105IPR003656Zinc finger, BED-type
SMARTSM006144.8E-134998IPR003656Zinc finger, BED-type
SuperFamilySSF576673.57E-75299No hitNo description
PfamPF028921.8E-95293IPR003656Zinc finger, BED-type
SuperFamilySSF530985.08E-6171222IPR012337Ribonuclease H-like domain
SuperFamilySSF1019413.92E-16219274IPR003441NAC domain
PROSITE profilePS5100519.668225278IPR003441NAC domain
PfamPF023656.9E-7226276IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDMISSTFDN QQTDVEMQCE DQEYQEASAD ANATSRASSQ AKKVKKMVVP RSRVWKHFSS  60
IKETRDKCIC HHCQKIFSCA SKSGTSNLKQ HLQICKEHKA WLTSQKKNQQ QIGNGGNLMA  120
SKVTEALFRQ ACNVLVVNLF KPHSRRTLTR NIEEMFVKKK EALKNLLFTS KQRVSLTTDI  180
WVSQVTCASY MVITAHFIDD QWQLKKLITG FKYAMDHKVN GQSQVPPGIR FHPTEEELLE  240
YYLRKKISNI KIDLDVIRDV DLNKLEPWDI QGSSFIFY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589285.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325721e-114AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589285.10.0PREDICTED: uncharacterized protein LOC106297626
TrEMBLA0A087HMU62e-62A0A087HMU6_ARAAL; Uncharacterized protein
STRINGA0A087HMU63e-63(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.13e-22NAC domain protein 66