PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588931.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 377aa MW: 40865.1 Da PI: 5.4576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.3	9.9e-17	274	321	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn+ ErrRR++iN+++ L+el+P + K +Ka++Le A+eY+ksLq XP_013588931.1 274 EKHNISERRRREKINEKMKALQELIPRC-----NKTDKASMLEDAIEYVKSLQ 321 58***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	18.673	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-22	274	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.94E-18	274	325	No hit	No description
Pfam	PF00010	3.0E-14	274	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-21	274	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-17	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGEDDIVELL WKSGQVVESS QTQRPPVPPP ILRGSGSGGG GGEESAPLPP PPPLHNHQQQ 60 PSDDQNLFIG EDEMASWLLH HPLREEDDFH SHLFYSDVVS AVPSTQPQAS VSLAPPLPPA 120 AGSAIHTPTA AERPMGQVIA ERRAENFLNF SRLRENIHTS GGVEVAAAAP WVPVVVRDLT 180 QVGSSATPSS LAPESCLTPA TVTGGVAQTF AVPRAVETVC EIGGPSSSGV PKTETEPATD 240 ERKRKEREEA AEDTEETGEE ARGSTSRKRS RAAEKHNISE RRRREKINEK MKALQELIPR 300 CNKTDKASML EDAIEYVKSL QMQIQMMSTG MTMMYTPNMP RFMAPSAMGM MGVNRPPFIT 360 FPGTAFPRPP AHMSPTV

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGEDDIVELL WKSGQVVESS QTQRPPVPPP ILRGSGSGGG GGEESAPLPP PPPLHNHQQQ  60
PSDDQNLFIG EDEMASWLLH HPLREEDDFH SHLFYSDVVS AVPSTQPQAS VSLAPPLPPA  120
AGSAIHTPTA AERPMGQVIA ERRAENFLNF SRLRENIHTS GGVEVAAAAP WVPVVVRDLT  180
QVGSSATPSS LAPESCLTPA TVTGGVAQTF AVPRAVETVC EIGGPSSSGV PKTETEPATD  240
ERKRKEREEA AEDTEETGEE ARGSTSRKRS RAAEKHNISE RRRREKINEK MKALQELIPR  300
CNKTDKASML EDAIEYVKSL QMQIQMMSTG MTMMYTPNMP RFMAPSAMGM MGVNRPPFIT  360
FPGTAFPRPP AHMSPTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	283	RKRSRAAEKHNISERRRR
2	279	284	ERRRRE
3	280	285	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588931.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588931.1	0.0	PREDICTED: transcription factor bHLH119-like isoform X2
Swissprot	Q9SVU7	7e-98	BH056_ARATH; Putative transcription factor bHLH056
TrEMBL	A0A0D3A3N7	0.0	A0A0D3A3N7_BRAOL; Uncharacterized protein
STRING	Bo1g017090.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28790.1	2e-67	bHLH family protein