PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588692.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 885aa    MW: 98067.5 Da    PI: 6.0213
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.62.8e-29543593252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  XP_013588692.1 543 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 593
                     89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.348528613IPR003035RWP-RK domain
PfamPF020422.8E-27545593IPR003035RWP-RK domain
SuperFamilySSF542773.11E-22774869No hitNo description
SMARTSM006669.9E-24783866IPR000270PB1 domain
PROSITE profilePS5174520.399783866IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.7E-22783863No hitNo description
CDDcd064074.16E-34784865No hitNo description
PfamPF005643.4E-17785865IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MDNTSPDIPA EEMDGWVKNL ISEEDMFSSS SNLVNFESFG SWCNTPSASD ILFTQYGLTN  60
SQSTTPTPFG GFTALPAEFS PSFHGLERCY VGEKRPVQEM SSQVHYLSGK RSKSSAIECS  120
VPRSLSYSLD EKMLKALSLF MEFSGEGILA QFWTPVKSGD HYMLSTCDQA YLLDSRLSGY  180
REVSRKYTFS AETSQYSSPG LPGRVFISGV PEWTSNVMYY KTAEYLRMKH ALDNDVRGSI  240
AIPVLEASGS SCCAVLELVT CREKPNFDLE MDSVCRALQA VNLQTSTIPR RQYLSSNQKE  300
ALSEIRDVLR AVCHAHRLPL ALAWIPCSYS KGTNNELVKV YGKQSDENSI LCIEESACYV  360
NDMDMECFVI ACMEHFLSKG QGVAGKALIS NKPSFSSDVK TFDISEYPLV QHARKFGLNA  420
AVATKLRSTF TGDSDYILEF FLPVNMKGRS EQQLLLDSLS GTMQRICRTL RTVSDEVGLW  480
SGDRMLNLTQ TTVSEGSFQT TLLDTDVNYS RSIFASDIAG SHGTLQQETS GARRPERKKS  540
STEKNVSLNV LQQYFSGSLK DAAKSLGVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI  600
QTVLDSVQGV EGGLKFDSAT GEFIAVGSLV QEFDTQKSLP CHHDDAFLKR QCDMDEDVSL  660
ELLKVKSHDG GKVKLEDSVE TNEARPAGSL MEPWVSKQSG LNYSDDFDIG TRSADVKKDK  720
DLGVRRCLSS LALAEPNPSI SSSMSDSSNG SGAVLVRSSS TSMEQDHNQT FRTHNSSSES  780
RSLLTVKATY RDDTIRFKLD PYVVGCSQLY KEVGKRFKLQ EGAFQLKYLD DDEEWVMLVT  840
DSDLQECLEI LNGMRKHTVK FLVRDIPGAA MGSSGGSNGY LGTGF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588692.10.0PREDICTED: protein NLP9-like
SwissprotQ9M1B00.0NLP9_ARATH; Protein NLP9
TrEMBLA0A0D3CUT90.0A0A0D3CUT9_BRAOL; Uncharacterized protein
STRINGBo6g076560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein