PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588525.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 385aa    MW: 43946.1 Da    PI: 8.0409
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.74.8e-2481125145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrgr+r +ks ++
  XP_013588525.1  81 DPEPGRCRRTDGKKWRCSREAHPDSKYCEKHMHRGRNRAKKSIDQ 125
                     79***************************************9886 PP
2QLQ63.45.7e-221651237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT++Q+q+L++Q+l+yKy+++++PvPp+L++ i++
  XP_013588525.1 16 PFTPTQWQELEHQALIYKYMVSGVPVPPDLIFSIRR 51
                    9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-131551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.7541651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.06781125IPR014977WRC domain
PfamPF088791.6E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMSLSGNSGR PIGRPPFTPT QWQELEHQAL IYKYMVSGVP VPPDLIFSIR RSLDSSLVSR  60
LLPHQPLGWG CYQMGFGRKQ DPEPGRCRRT DGKKWRCSRE AHPDSKYCEK HMHRGRNRAK  120
KSIDQSQTTA PLTSPSLSFP NNIPSPTLSS SSTTYYASSS SPLAEAYSNS NRFGVGSSNS  180
RGYFNNHSFD YPYPSTPPKQ QQQQQQTLSH VSALSLHQNT STPQLNVLAS ATDHKDFRYF  240
QGIGERVGVG ERTFFPEASR SFQDSPYHHH KQPLATVVDD PYDYTTDNKF DHHHTYSSQH  300
HHHNDQDHRQ QQCFVLGADM FNKPTRTVLE YTSRQDHLNQ EEEEKDSSDT KKSLHHFFGE  360
EWTQNKNSSD SWLDLSSHSR LDTGS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15960617}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026381e-161AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588525.10.0PREDICTED: growth-regulating factor 5-like isoform X2
SwissprotQ8L8A60.0GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A0D3ADT50.0A0A0D3ADT5_BRAOL; Uncharacterized protein
STRINGBo1g134740.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-152growth-regulating factor 5