PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588513.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 250aa    MW: 27611.7 Da    PI: 4.7357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13184229655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_013588513.1 184 SIAERMRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 229
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.742178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16181243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-12182233No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-13184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQSTHSGGGE GGGGGDVSRG GLSRIRSAPA TWIETLLEDD EEDDLKPNLC LTELLTGNSA  60
GLTSPDTFEF PSSVEQGLYN HQSGFYRQNS SPTDFLSGSG AATDGFLSNF GIPANYDYLP  120
PNVNISPGSK RSREIEAQFS SQMKEEQMSS GVSGMMDMNM DKLLDDSVPF RVRAKRGCAT  180
HPRSIAERMR RTRISDRIRR LQELVPNMDK QTNTADMLEE AVEYVKALQC QIQELTEQQK  240
RCGCKPKEEQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588513.10.0PREDICTED: transcription factor bHLH80 isoform X1
SwissprotQ9C8P81e-132BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A3N6QW951e-176A0A3N6QW95_BRACR; Uncharacterized protein
STRINGBo6g043840.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-111bHLH family protein