PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013588441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 29793.8 Da PI: 10.1394 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.6 | 7.1e-16 | 124 | 213 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp++f+ +h + + ++tl de+ + k+ +k++ l++GW++F+ +++L +gD vvF+l++ ++f + XP_013588441.1 124 FIKPMLQSHVTGGFWLGLPRSFCHTHlpK----YDEMITLVDENEDEAVTKYLADKNG----LSGGWRGFAIDHQLVDGDAVVFHLINPTTF--K 208 89*********************999443....3458***************777777....************************986777..8 PP EEEE- CS B3 94 vkvfr 98 v ++r XP_013588441.1 209 VYIIR 213 88877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-20 | 115 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-25 | 117 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.83E-24 | 122 | 213 | No hit | No description |
PROSITE profile | PS50863 | 11.082 | 124 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-21 | 124 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-14 | 124 | 213 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MVESKYEQIR LKRVEENKKR MIELNLNKLS HSLRVSSPSP KPSPAKARTP RTPVDSSEVR 60 RSSRAKNPPP SYKEFGLEPL ERPRRSYQRR DLLNRVYASD DARVYAIDRA EALQSSLEPE 120 FPSFIKPMLQ SHVTGGFWLG LPRSFCHTHL PKYDEMITLV DENEDEAVTK YLADKNGLSG 180 GWRGFAIDHQ LVDGDAVVFH LINPTTFKVY IIRVNDESNN GLGGSNEKEL VIKPNKNQEE 240 KNVSEVPPLS NSGKRKRRGR K |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013588441.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189312 | 4e-94 | AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588441.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Swissprot | Q1G3M3 | 1e-120 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A0D3D1V6 | 0.0 | A0A0D3D1V6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GF42 | 0.0 | A0A3P6GF42_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g124000.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-111 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|