PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36480.7 Da PI: 5.8827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.7 | 1.5e-16 | 126 | 177 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +s++ + a+i+ A++Y+k+Lq XP_013588246.1 126 QRMTHIAVERNRRKQMNEYLAVLRSLMPPC---YSQRGDQASIVGGAINYLKELQ 177 79****************************...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.56E-16 | 124 | 181 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-16 | 124 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.761 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-19 | 125 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-14 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MALEAVVYLQ DPLSYSSCKD FPFHDLYFQQ GEDQDPLDTK NNIKLGQEQR QGFGSINYNG 60 KGGDNSVDYS YNDQVDLQWP PHELPYGSTV DTKNHPPPSD MAATGGERRK RRRTRSNKNK 120 EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPCYSQRG DQASIVGGAI NYLKELQHQL 180 QSMEPPVKIT ATEDTGATAA SAGDQNNTIS ASSSGPFSDF FAFPQYSSRP SSSSVAEGTA 240 EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH LNVTTHDNSV LYSISLKVEE 300 GSQLNTVEDI AAAVNQILMR IEEESPLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 112 | RKRRR |
2 | 108 | 113 | RKRRRT |
3 | 126 | 137 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588246.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588246.1 | 0.0 | PREDICTED: transcription factor bHLH96-like | ||||
Refseq | XP_013672411.1 | 0.0 | transcription factor bHLH96-like | ||||
Refseq | XP_013684773.1 | 0.0 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 0.0 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0D3D026 | 0.0 | A0A0D3D026_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6Q000 | 0.0 | A0A3N6Q000_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6GFE1 | 0.0 | A0A3P6GFE1_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g114730.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-173 | bHLH family protein |
Publications ? help Back to Top | |||
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