PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587927.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 591aa    MW: 65478.6 Da    PI: 5.3229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3191e-972225902374
            GRAS   2 velLlecAeavssgdle.....laqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                     +e+L+++Ae + +++++     laq +Larl+++ s + +      p+qR+a+++teAL + +++         +p   s++n++ ++aa+++fs
  XP_013587927.1 222 IEQLFNAAELIGNNNNNgdhtaLAQGILARLNHHLSYSNNnnnknpPFQRAASHITEALLSLINN--------ASPPLISPENMILRIAAYRTFS 308
                     6899******9997766666669**********95544433467779*****************9........4444455678************ PP

            GRAS  86 evsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                     e+sP+l+f ++taNq Ile+ + e   +r+HiiDfd+++G+QW +L+q+LasR+ + + sl+iT++++p s+  ++ el+ t+e+L++fA e+++
  XP_013587927.1 309 ETSPFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELASRRrNRASSLKITVFAPPPSTvsDEFELRFTEENLRSFAGEVKI 403
                     **********************99999************************99857778*********9988899******************** PP

            GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     pfe+++l  + l +  ++  ++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l
  XP_013587927.1 404 PFEIELLSLELLLNPAYWPVSLRSleKEAVAVNLPVNSVVSG--------YLPFILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTL 490
                     ******97777777788877777766*********9655554........4566***************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                     ++sl+a+   +s+e+ +vEr++++++i++++++++++     e+ + Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve+++gslv++W
  XP_013587927.1 491 LESLDAN---QSQEDESVERFWVQPSIEKLLMKRHRW----IERSQPWRSLFTQCGFSPASLSQTAEAQAECLLQRSPVRGFHVEKRHGSLVMCW 578
                     *******...8**************************....88888************************************************* PP

            GRAS 363 kdrpLvsvSaWr 374
                     ++++Lv+vSaW+
  XP_013587927.1 579 QRKELVTVSAWK 590
                     ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.4195570IPR005202Transcription factor GRAS
PfamPF035143.5E-95222590IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGVVSSL YSDPQKIWFN QDKTGAEQDL GYVVGGVLPE PTSVLDALRS  60
PSPLASHSST TTTTTTTTMT LSSSHGGGTV TATATAVDDK CSQIGLDDLD GGQEQSILRL  120
IMDPGSGFGV FDPGFGFGSG SVPVNPLLSS SFPYQEELTF SNPPSSPPAK RFNSGSHQPV  180
FPFPDPGHDP FLVRRQQQFQ FPFQFHQQQL PGTAGDDQTV IIEQLFNAAE LIGNNNNNGD  240
HTALAQGILA RLNHHLSYSN NNNNKNPPFQ RAASHITEAL LSLINNASPP LISPENMILR  300
IAAYRTFSET SPFLQFVNFT ANQSILESCN DELGFDRIHI IDFDVGYGGQ WSSLMQELAS  360
RRRNRASSLK ITVFAPPPST VSDEFELRFT EENLRSFAGE VKIPFEIELL SLELLLNPAY  420
WPVSLRSLEK EAVAVNLPVN SVVSGYLPFI LRFLKQISPN VVVCSDRGCD RNDAPFPNAV  480
IHALQYHTTL LESLDANQSQ EDESVERFWV QPSIEKLLMK RHRWIERSQP WRSLFTQCGF  540
SPASLSQTAE AQAECLLQRS PVRGFHVEKR HGSLVMCWQR KELVTVSAWK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2926359034375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587927.10.0PREDICTED: scarecrow-like protein 27 isoform X2
RefseqXP_013587928.10.0PREDICTED: scarecrow-like protein 27 isoform X3
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A0D3CUG80.0A0A0D3CUG8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H1120.0A0A3P6H112_BRAOL; Uncharacterized protein
STRINGBo6g074360.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]